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Code Releases Activity
AMR/man
History
Dr. Matthijs Berends f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117) 
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
..
figures
website update
2022-12-11 11:44:29 +01:00
ab_from_text.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
ab_property.Rd
improve as.mo()
2023-05-24 15:55:53 +02:00
add_custom_antimicrobials.Rd
check for 2.0
2023-03-12 13:02:37 +01:00
add_custom_microorganisms.Rd
unit testing R4.3
2023-05-26 20:37:00 +02:00
age_groups.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
age.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
AMR-deprecated.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
AMR-options.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
AMR.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
antibiogram.Rd
add oxygen tolerance
2023-05-11 21:56:27 +02:00
antibiotic_class_selectors.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
antibiotics.Rd
updated microorganism codes
2023-05-26 16:10:01 +02:00
as.ab.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
as.av.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
as.disk.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
as.mic.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
as.mo.Rd
updated microorganism codes
2023-05-26 16:10:01 +02:00
as.sir.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
atc_online.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
av_from_text.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
av_property.Rd
improve as.mo()
2023-05-24 15:55:53 +02:00
availability.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
bug_drug_combinations.Rd
fix for antibiograms on R < 3.5
2023-02-24 09:43:10 +01:00
clinical_breakpoints.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
count.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
custom_eucast_rules.Rd
add oxygen tolerance
2023-05-11 21:56:27 +02:00
dosage.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
eucast_rules.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
example_isolates_unclean.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
example_isolates.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
first_isolate.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
g.test.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
get_episode.Rd
update NEWS
2023-03-11 14:43:31 +01:00
ggplot_pca.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
ggplot_sir.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
guess_ab_col.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
intrinsic_resistant.Rd
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
italicise_taxonomy.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
join.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
key_antimicrobials.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
kurtosis.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
like.Rd
fix documentation
2023-03-16 08:55:37 +01:00
mdro.Rd
fix documentation
2023-03-16 08:55:37 +01:00
mean_amr_distance.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
microorganisms.codes.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
microorganisms.Rd
updated microorganism codes
2023-05-26 16:10:01 +02:00
mo_matching_score.Rd
fix coercing NA to custom codes, fixes #107
2023-05-08 13:04:18 +02:00
mo_property.Rd
updated microorganism codes
2023-05-26 16:10:01 +02:00
mo_source.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
pca.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
plot.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
proportion.Rd
documentation for 'data.table' AB selectors
2023-03-11 16:54:02 +01:00
random.Rd
Update clinical breakpoints and fix some as.mo() bugs (#117)
2023-06-22 15:10:59 +02:00
resistance_predict.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
skewness.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
translate.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
WHOCC.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
WHONET.Rd
fix for antibiogram(), transform WHONET data set to sir
2023-02-22 15:40:05 +01:00