irods-install
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irods-install
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253
irods-install
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irods installation on centos7:
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# rpm --import https://packages.irods.org/irods-signing-key.asc
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# wget -qO - https://packages.irods.org/renci-irods.yum.repo | sudo tee /etc/yum.repos.d/renci-irods.yum.repo
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# yum install irods-server irods-database-plugin-postgres
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# yum install postgresql-server
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# postgresql-setup initdb
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Initializing database ... OK
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# systemctl start postgresql
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# su - postgres
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Last login: Fri Oct 26 11:30:44 CEST 2018 on pts/0
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$ psql
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psql (9.2.24)
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Type "help" for help.
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postgres=# CREATE USER irods WITH PASSWORD 'ir0ds';
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CREATE ROLE
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postgres=# CREATE DATABASE "ICAT";
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CREATE DATABASE
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postgres=# GRANT ALL PRIVILEGES ON DATABASE "ICAT" TO irods;
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GRANT
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postgres=# \l
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List of databases
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Name | Owner | Encoding | Collate | Ctype | Access privileges
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-----------+----------+----------+-------------+-------------+-----------------------
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ICAT | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =Tc/postgres +
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| | | | | postgres=CTc/postgres+
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| | | | | irods=CTc/postgres
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postgres | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 |
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template0 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres +
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| | | | | postgres=CTc/postgres
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template1 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres +
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| | | | | postgres=CTc/postgres
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(4 rows)
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# python /var/lib/irods/scripts/setup_irods.py
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The iRODS service account name needs to be defined.
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iRODS user [irods]:
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iRODS group [irods]:
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+--------------------------------+
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| Setting up the service account |
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+--------------------------------+
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Existing Group Detected: irods
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Existing Account Detected: irods
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Setting owner of /var/lib/irods to irods:irods
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Setting owner of /etc/irods to irods:irods
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iRODS server's role:
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1. provider
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2. consumer
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Please select a number or choose 0 to enter a new value [1]:
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Updating /etc/irods/server_config.json...
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+-----------------------------------------+
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| Configuring the database communications |
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+-----------------------------------------+
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You are configuring an iRODS database plugin. The iRODS server cannot be started until its database has been properly configured.
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ODBC driver for postgres [PostgreSQL]:
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Database server's hostname or IP address [localhost]:
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Database server's port [5432]:
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Database name [ICAT]:
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Database username [irods]:
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-------------------------------------------
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Database Type: postgres
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ODBC Driver: PostgreSQL
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Database Host: localhost
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Database Port: 5432
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Database Name: ICAT
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Database User: irods
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-------------------------------------------
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Please confirm [yes]:
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Database password:
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Updating /etc/irods/server_config.json...
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Error encountered running setup_irods:
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Traceback (most recent call last):
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File "/var/lib/irods/scripts/setup_irods.py", line 437, in main
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setup_server(irods_config, json_configuration_file=options.json_configuration_file)
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File "/var/lib/irods/scripts/setup_irods.py", line 116, in setup_server
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database_interface.setup_database_config(irods_config)
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File "/var/lib/irods/scripts/irods/database_interface.py", line 176, in setup_database_config
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if database_already_in_use_by_irods(irods_config):
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File "/var/lib/irods/scripts/irods/database_interface.py", line 73, in database_already_in_use_by_irods
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with contextlib.closing(database_connect.get_database_connection(irods_config)) as connection:
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File "/var/lib/irods/scripts/irods/database_connect.py", line 218, in get_database_connection
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sys.exc_info()[2])
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File "/var/lib/irods/scripts/irods/database_connect.py", line 201, in get_database_connection
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return pypyodbc.connect(connection_string.encode('ascii'), ansi=True)
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File "/var/lib/irods/scripts/irods/pypyodbc.py", line 2452, in __init__
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self.connect(connectString, autocommit, ansi, timeout, unicode_results, readonly)
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File "/var/lib/irods/scripts/irods/pypyodbc.py", line 2501, in connect
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check_success(self, ret)
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File "/var/lib/irods/scripts/irods/pypyodbc.py", line 988, in check_success
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ctrl_err(SQL_HANDLE_DBC, ODBC_obj.dbc_h, ret, ODBC_obj.ansi)
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File "/var/lib/irods/scripts/irods/pypyodbc.py", line 966, in ctrl_err
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raise DatabaseError(state,err_text)
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IrodsError: pypyodbc encountered an error connecting to the database:
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('28000', '[28000] [unixODBC]FATAL: Ident authentication failed for user "irods"')
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Exiting...
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# vi /var/lib/pgsql/data/pg_hba.conf:
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host all all 127.0.0.1/32 md5
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# systemctl restart postgresql
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# python /var/lib/irods/scripts/setup_irods.py
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The iRODS service account name needs to be defined.
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iRODS user [irods]:
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iRODS group [irods]:
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+--------------------------------+
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| Setting up the service account |
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+--------------------------------+
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Existing Group Detected: irods
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Existing Account Detected: irods
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Setting owner of /var/lib/irods to irods:irods
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Setting owner of /etc/irods to irods:irods
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iRODS server's role:
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1. provider
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2. consumer
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Please select a number or choose 0 to enter a new value [1]:
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Updating /etc/irods/server_config.json...
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+-----------------------------------------+
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| Configuring the database communications |
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+-----------------------------------------+
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You are configuring an iRODS database plugin. The iRODS server cannot be started until its database has been properly configured.
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ODBC driver for postgres [PostgreSQL]:
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Database server's hostname or IP address [localhost]:
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Database server's port [5432]:
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Database name [ICAT]:
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Database username [irods]:
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-------------------------------------------
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Database Type: postgres
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ODBC Driver: PostgreSQL
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Database Host: localhost
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Database Port: 5432
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Database Name: ICAT
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Database User: irods
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-------------------------------------------
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Please confirm [yes]:
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Database password:
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Updating /etc/irods/server_config.json...
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Listing database tables...
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Salt for passwords stored in the database:
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Updating /etc/irods/server_config.json...
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+--------------------------------+
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| Configuring the server options |
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+--------------------------------+
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iRODS server's zone name [tempZone]: testZone
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iRODS server's port [1247]:
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iRODS port range (begin) [20000]:
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iRODS port range (end) [20199]:
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Control Plane port [1248]:
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Schema Validation Base URI (or off) [file:///var/lib/irods/configuration_schemas]:
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iRODS server's administrator username [rods]: irods
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-------------------------------------------
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Zone name: testZone
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iRODS server port: 1247
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iRODS port range (begin): 20000
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iRODS port range (end): 20199
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Control plane port: 1248
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Schema validation base URI: file:///var/lib/irods/configuration_schemas
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iRODS server administrator: irods
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-------------------------------------------
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Please confirm [yes]: yes
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iRODS server's zone key:
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Zone key must be at least 1 character in length.
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iRODS server's zone key:
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iRODS server's negotiation key (32 characters):
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Negotiation key must be exactly 32 characters in length.
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iRODS server's negotiation key (32 characters):
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Control Plane key (32 characters):
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Updating /etc/irods/server_config.json...
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+-----------------------------------+
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| Setting up the client environment |
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+-----------------------------------+
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iRODS server's administrator password:
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Updating /var/lib/irods/.irods/irods_environment.json...
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+--------------------------+
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| Setting up default vault |
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+--------------------------+
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iRODS Vault directory [/var/lib/irods/Vault]:
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+-------------------------+
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| Setting up the database |
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+-------------------------+
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Listing database tables...
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Creating database tables...
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+-------------------+
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| Starting iRODS... |
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+-------------------+
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Validating [/var/lib/irods/.irods/irods_environment.json]... Success
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Validating [/var/lib/irods/VERSION.json]... Success
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Validating [/etc/irods/server_config.json]... Success
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Validating [/etc/irods/host_access_control_config.json]... Success
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Validating [/etc/irods/hosts_config.json]... Success
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Ensuring catalog schema is up-to-date...
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Updating to schema version 2...
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Updating to schema version 3...
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Updating to schema version 4...
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Updating to schema version 5...
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Catalog schema is up-to-date.
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Starting iRODS server...
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Success
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+---------------------+
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| Attempting test put |
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+---------------------+
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Putting the test file into iRODS...
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Getting the test file from iRODS...
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Removing the test file from iRODS...
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Success.
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+--------------------------------+
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| iRODS is installed and running |
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+--------------------------------+
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