chore(initial): initial commit

.gitignore

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+molgenis-ops-rancher.iml
+.idea

templates/molgenis/0/README.md

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+# MOLGENIS
+### Flexible software for scientific data
+#### Process, manage, query, annotate, integrate, analyse, share
+
+This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
+
+- MOLGENIS instance
+- Postgress instance
+- ElasticSearch instance
+
+## Usage:
+
+- Select MOLGENIS from catalog
+- Enter the name of the replica set
+- Click deploy
+
+MOLGENIS can now be accessed over the Rancher network.

templates/molgenis/0/docker-compose.yml

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+app:
+  image: sidohaakma/molgenis-docker:2.0.0
+  ports:
+    - 8081:8080
+  links:
+    - db
+  volumes:
+    - app-data:/opt/molgenis
+  labels:
+    io.rancher.container.create_agent: 'true'
+    io.rancher.scheduler.global: 'true'
+db:
+  build: ./db
+  expose:
+    - 5432
+  volumes:
+    - db-data:/var/lib/postgresql/data
+  labels:
+    io.rancher.container.create_agent: 'true'
+volumes:
+    db-data:
+    app-data:

templates/molgenis/0/rancher-compose.yml

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+.catalog:
+  name: molgenis
+  version: v2.0.0
+  description: Molgenis
+  minimum_rancher_version: v1.6.3

templates/molgenis/1/README.md

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+# MOLGENIS
+**Flexible software for scientific data**
+
+
+This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
+
+- MOLGENIS 
+  - Elasticsearch is packaged with MOLGENIS
+- Postgress
+
+**Usage:**
+
+
+- Select MOLGENIS from catalog
+- The stack-name must not be altered (this is hardcoded in de docker-compose file) 
+- Click *Launch*
+
+MOLGENIS can now be accessed over the Rancher network.

templates/molgenis/1/docker-compose.yml

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+app:
+  image: sidohaakma/molgenis-docker:4.1.0
+  ports:
+    - 8081:8080
+  links:
+    - db
+  volumes_from:
+    - molgenis-data
+  labels:
+    io.rancher.sidekicks: molgenis-data
+    io.rancher.scheduler.global: true
+    io.rancher.scheduler.affinity:host_label: type=molgenis
+    io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+  db:
+    image: postgres:9.6-alpine
+    environment:
+      - POSTGRES_USER=molgenis
+      - POSTGRES_PASSWORD=molgenis
+      - POSTGRES_DB=molgenis
+    expose:
+      - 5432
+     volumes_from:
+      - postgres-data
+    labels:
+      io.rancher.sidekicks: postgres-data
+      io.rancher.scheduler.global: true
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+
+ postgres-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+    volumes:
+      - /var/lib/postgresql/data/pgdata
+  molgenis-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+    volumes:
+      - /opt/molgenis

templates/molgenis/1/rancher-compose.yml

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+.catalog:
+  name: molgenis
+  version: v4.1.0
+  description: Molgenis
+  minimum_rancher_version: v1.6.3

templates/molgenis/2/README.md

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+# MOLGENIS
+**Flexible software for scientific data**
+
+
+This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
+
+- MOLGENIS
+- Postgress
+- ElasticSearch
+
+**Usage:**
+
+
+- Select MOLGENIS from catalog
+- The stack-name must not be altered (this is hardcoded in de docker-compose file) 
+- Click *Launch*
+
+MOLGENIS can now be accessed over the Rancher network.

templates/molgenis/2/docker-compose.yml

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+  molgenis:
+    image: sidohaakma/molgenis-docker:5.2.0
+    ports:
+      - 8081:8080
+    links:
+      - postgres
+      - elasticsearch
+    volumes_from:
+      - molgenis-data
+    labels:
+      io.rancher.sidekicks: molgenis-data
+      io.rancher.scheduler.global: true
+      io.rancher.container.pull_image: always
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+  postgres:
+    image: postgres:9.6-alpine
+    environment:
+      - POSTGRES_USER=molgenis
+      - POSTGRES_PASSWORD=molgenis
+      - POSTGRES_DB=molgenis
+      - PGDATA=/var/lib/postgresql/data/pgdata
+    volumes_from:
+      - postgres-data
+    ports:
+      - 5432
+    labels:
+      io.rancher.sidekicks: postgres-data
+      io.rancher.scheduler.global: true
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+  elasticsearch:
+    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
+    environment:
+      - "cluster.name=molgenis"
+      - "bootstrap.memory_lock=true"
+      - "ES_JAVA_OPTS=-Xms512m -Xmx512m"
+      - "xpack.security.enabled=false"
+    ulimits:
+      memlock:
+        soft: -1
+        hard: -1
+#    volumes_from:
+#      - elasticsearch-data
+    ports:
+       - 9200:9200
+       - 9300:9300
+    labels:
+      #io.rancher.sidekicks: elasticsearch-data
+      io.rancher.scheduler.global: true
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+#  loadbalancer:
+#    image: rancher/lb-service-haproxy:v0.7.5
+#    ports:
+#      - 80
+#    labels:
+#      io.rancher.scheduler.global: true
+#      io.rancher.scheduler.affinity:host_label: type=molgenis
+#      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+
+  postgres-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+    volumes:
+      - /var/lib/postgresql/data/pgdata
+  molgenis-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+      io.rancher.scheduler.affinity:host_label: type=molgenis
+      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+    volumes:
+      - /opt/molgenis
+#  elasticsearch-data:
+#    image: busybox
+#    labels:
+#      io.rancher.container.start_once: true
+#      io.rancher.scheduler.affinity:host_label: type=molgenis
+#      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
+#    volumes:
+#      - /usr/share/elasticsearch/data

templates/molgenis/2/rancher-compose.yml

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+.catalog:
+  name: molgenis
+  version: v5.0.0
+  description: Molgenis
+  minimum_rancher_version: v1.6.3
+#loadbalancer:
+#  scale: 1
+#  lb_config:
+#    port_rules:
+#    - source_port: 80
+#      target_port: 8081
+#      service: molgenis
+#  health_check:
+#    port: 42
+#    interval: 2000
+#    unhealthy_threshold: 3
+#    healthy_threshold: 2
+#    response_timeout: 2000

templates/molgenis/config.yml

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+name: Molgenis
+description: |
+  Molgenis | Flexible software for scientific data
+version: v5.0.0
+category: All
+maintainer: Molgenis DEV-team and community-members
+projectURL: http://molgenis.org