chore(0 and 1): added latest and stable tag
This commit is contained in:
parent
fcac809118
commit
f832f9806e
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@ -1,17 +1,16 @@
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# MOLGENIS
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### Flexible software for scientific data
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#### Process, manage, query, annotate, integrate, analyse, share
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Flexible software for scientific data
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## Rancher configuration
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This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
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- MOLGENIS instance
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- Postgress instance
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- ElasticSearch instance
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## Usage:
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- MOLGENIS
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- Postgress
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- ElasticSearch
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## Usage
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- Select MOLGENIS from catalog
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- Enter the name of the replica set
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- Click deploy
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- The stack-name must not be altered (this is hardcoded in de docker-compose file)
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- Click *Launch*
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MOLGENIS can now be accessed over the Rancher network.
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@ -1,21 +1,85 @@
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app:
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image: registry.webhosting.rug.nl/molgenis:2.0.1
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ports:
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- 8081:8080
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links:
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- db
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volumes:
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- app-data:/opt/molgenis
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labels:
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io.rancher.container.create_agent: true
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io.rancher.scheduler.global: true
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traefik.frontend.rule: Host:${DOMAINS}
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traefik.backend: ${TRAEFIK_BACKEND}
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traefik.enable: true
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traefik.port: 8080
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db:
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image: registry.webhosting.rug.nl/molgenis-postgres:2.0.1
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expose:
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- 5432
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volumes:
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- db-data:/var/lib/postgresql/data
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molgenis:
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image: registry.webhosting.rug.nl/molgenis/molgenis:stable
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ports:
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- 8080
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links:
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- postgres
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- elasticsearch
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volumes_from:
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- molgenis-data
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environment:
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- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
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- "db_driver=org.postgresql.Driver"
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- "db_user=molgenis"
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- "db_password=molgenis"
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- "elasticsearch.cluster.name=molgenis"
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- "elasticsearch.transport.addresses=elasticsearch:9300"
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labels:
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io.rancher.sidekicks: molgenis-data
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io.rancher.container.pull_image: always
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io.rancher.scheduler.global: true
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traefik.frontend.rule: Host:${DOMAINS}
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traefik.backend: ${TRAEFIK_BACKEND}
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traefik.enable: true
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traefik.port: 8080
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postgres:
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image: postgres:9.6-alpine
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environment:
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- POSTGRES_USER=molgenis
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- POSTGRES_PASSWORD=molgenis
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- POSTGRES_DB=molgenis
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- PGDATA=/var/lib/postgresql/data/pgdata
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volumes_from:
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- postgres-data
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ports:
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- 5432
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labels:
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io.rancher.sidekicks: postgres-data
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io.rancher.scheduler.global: true
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||||
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opencpu:
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image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:stable
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ports:
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- 8004:8004
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elasticsearch:
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image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
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environment:
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- "cluster.name=molgenis"
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- "bootstrap.memory_lock=true"
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- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
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- "xpack.security.enabled=false"
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ulimits:
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memlock:
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soft: -1
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hard: -1
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# volumes_from:
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# - elasticsearch-data
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ports:
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- 9200:9200
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- 9300:9300
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labels:
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#io.rancher.sidekicks: elasticsearch-data
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io.rancher.scheduler.global: true
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postgres-data:
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image: busybox
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labels:
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io.rancher.container.start_once: true
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volumes:
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- /var/lib/postgresql/data/pgdata
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molgenis-data:
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image: busybox
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labels:
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io.rancher.container.start_once: true
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volumes:
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- /opt/molgenis
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# elasticsearch-data:
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# image: busybox
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# labels:
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# io.rancher.container.start_once: true
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# volumes:
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# - /usr/share/elasticsearch/data
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@ -1,6 +1,6 @@
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.catalog:
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name: molgenis
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version: v2.0.0
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version: latest
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description: Molgenis
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minimum_rancher_version: v1.6.3
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questions:
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@ -25,4 +25,4 @@
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unhealthy_threshold: 3
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request_line: 'GET / HTTP/1.0'
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healthy_threshold: 2
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response_timeout: 5000
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response_timeout: 5000
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@ -1,13 +1,12 @@
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# MOLGENIS
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||||
Flexible software for scientific data
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||||
|
||||
## Rancher configuration
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This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
|
||||
- MOLGENIS
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||||
- Elasticsearch is packaged with MOLGENIS
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- MOLGENIS
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- Postgress
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- ElasticSearch
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## Usage
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- Select MOLGENIS from catalog
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|
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@ -1,42 +1,85 @@
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app:
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image: registry.webhosting.rug.nl/molgenis/molgenis:4.1.0
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ports:
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- 8081:8080
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links:
|
||||
- db
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volumes_from:
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- molgenis-data
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labels:
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io.rancher.sidekicks: molgenis-data
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io.rancher.scheduler.global: true
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traefik.frontend.rule: Host:${DOMAINS}
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traefik.backend: ${TRAEFIK_BACKEND}
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traefik.enable: true
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traefik.port: 8080
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molgenis:
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image: registry.webhosting.rug.nl/molgenis/molgenis:latest
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ports:
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- 8080
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links:
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- postgres
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- elasticsearch
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volumes_from:
|
||||
- molgenis-data
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environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
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- "db_driver=org.postgresql.Driver"
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- "db_user=molgenis"
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- "db_password=molgenis"
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- "elasticsearch.cluster.name=molgenis"
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- "elasticsearch.transport.addresses=elasticsearch:9300"
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labels:
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io.rancher.sidekicks: molgenis-data
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||||
io.rancher.container.pull_image: always
|
||||
io.rancher.scheduler.global: true
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
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||||
traefik.enable: true
|
||||
traefik.port: 8080
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||||
|
||||
db:
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postgres:
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image: postgres:9.6-alpine
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environment:
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- POSTGRES_USER=molgenis
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- POSTGRES_PASSWORD=molgenis
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- POSTGRES_DB=molgenis
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expose:
|
||||
- 5432
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volumes_from:
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
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||||
volumes_from:
|
||||
- postgres-data
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||||
ports:
|
||||
- 5432
|
||||
labels:
|
||||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
postgres-data:
|
||||
opencpu:
|
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image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:latest
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||||
ports:
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||||
- 8004:8004
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|
||||
elasticsearch:
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image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
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environment:
|
||||
- "cluster.name=molgenis"
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- "bootstrap.memory_lock=true"
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||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
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||||
- "xpack.security.enabled=false"
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||||
ulimits:
|
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memlock:
|
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soft: -1
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||||
hard: -1
|
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# volumes_from:
|
||||
# - elasticsearch-data
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||||
ports:
|
||||
- 9200:9200
|
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- 9300:9300
|
||||
labels:
|
||||
#io.rancher.sidekicks: elasticsearch-data
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||||
io.rancher.scheduler.global: true
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||||
|
||||
postgres-data:
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image: busybox
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labels:
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io.rancher.container.start_once: true
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||||
volumes:
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||||
- /var/lib/postgresql/data/pgdata
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||||
|
||||
molgenis-data:
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image: busybox
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labels:
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||||
io.rancher.container.start_once: true
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volumes:
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- /opt/molgenis
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- /opt/molgenis
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|
||||
# elasticsearch-data:
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# image: busybox
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||||
# labels:
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||||
# io.rancher.container.start_once: true
|
||||
# volumes:
|
||||
# - /usr/share/elasticsearch/data
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||||
|
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@ -1,6 +1,6 @@
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.catalog:
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name: molgenis
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version: v4.1.0
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version: stable
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description: Molgenis
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minimum_rancher_version: v1.6.3
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||||
questions:
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@ -25,4 +25,4 @@
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unhealthy_threshold: 3
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||||
request_line: 'GET / HTTP/1.0'
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||||
healthy_threshold: 2
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response_timeout: 5000
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response_timeout: 5000
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|
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@ -1,16 +1,17 @@
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|||
# MOLGENIS
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||||
Flexible software for scientific data
|
||||
### Flexible software for scientific data
|
||||
#### Process, manage, query, annotate, integrate, analyse, share
|
||||
|
||||
## Rancher configuration
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
- MOLGENIS instance
|
||||
- Postgress instance
|
||||
- ElasticSearch instance
|
||||
|
||||
## Usage:
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||
- Click *Launch*
|
||||
- Enter the name of the replica set
|
||||
- Click deploy
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network.
|
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@ -1,79 +1,21 @@
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molgenis:
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image: registry.webhosting.rug.nl/molgenis/molgenis:5.2.0
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ports:
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||||
- 8080
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||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.container.pull_image: always
|
||||
io.rancher.scheduler.global: true
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=molgenis
|
||||
- POSTGRES_PASSWORD=molgenis
|
||||
- POSTGRES_DB=molgenis
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes_from:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
labels:
|
||||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=molgenis"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
# volumes_from:
|
||||
# - elasticsearch-data
|
||||
ports:
|
||||
- 9200:9200
|
||||
- 9300:9300
|
||||
# labels:
|
||||
#io.rancher.sidekicks: elasticsearch-data
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:5.2.0
|
||||
ports:
|
||||
- 8004:8004
|
||||
|
||||
postgres-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /var/lib/postgresql/data/pgdata
|
||||
|
||||
molgenis-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /opt/molgenis
|
||||
|
||||
# elasticsearch-data:
|
||||
# image: busybox
|
||||
# labels:
|
||||
# io.rancher.container.start_once: true
|
||||
# io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
# io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
# volumes:
|
||||
# - /usr/share/elasticsearch/data
|
||||
app:
|
||||
image: registry.webhosting.rug.nl/molgenis:2.0.1
|
||||
ports:
|
||||
- 8081:8080
|
||||
links:
|
||||
- db
|
||||
volumes:
|
||||
- app-data:/opt/molgenis
|
||||
labels:
|
||||
io.rancher.container.create_agent: true
|
||||
io.rancher.scheduler.global: true
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
db:
|
||||
image: registry.webhosting.rug.nl/molgenis-postgres:2.0.1
|
||||
expose:
|
||||
- 5432
|
||||
volumes:
|
||||
- db-data:/var/lib/postgresql/data
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
.catalog:
|
||||
name: molgenis
|
||||
version: v5.2.0
|
||||
version: v2.0.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
|
|
|
@ -1,12 +1,13 @@
|
|||
# MOLGENIS
|
||||
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- MOLGENIS
|
||||
- Elasticsearch is packaged with MOLGENIS
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
|
|
|
@ -1,78 +1,42 @@
|
|||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:6.0.0
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.container.pull_image: always
|
||||
io.rancher.scheduler.global: true
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
app:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:4.1.0
|
||||
ports:
|
||||
- 8081:8080
|
||||
links:
|
||||
- db
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.scheduler.global: true
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
db:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=molgenis
|
||||
- POSTGRES_PASSWORD=molgenis
|
||||
- POSTGRES_DB=molgenis
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes_from:
|
||||
- postgres-data
|
||||
ports:
|
||||
expose:
|
||||
- 5432
|
||||
volumes_from:
|
||||
- postgres-data
|
||||
labels:
|
||||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=molgenis"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
# volumes_from:
|
||||
# - elasticsearch-data
|
||||
ports:
|
||||
- 9200:9200
|
||||
- 9300:9300
|
||||
labels:
|
||||
#io.rancher.sidekicks: elasticsearch-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:6.0.0
|
||||
ports:
|
||||
- 8004:8004
|
||||
|
||||
postgres-data:
|
||||
postgres-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /var/lib/postgresql/data/pgdata
|
||||
|
||||
molgenis-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /opt/molgenis
|
||||
|
||||
# elasticsearch-data:
|
||||
# image: busybox
|
||||
# labels:
|
||||
# io.rancher.container.start_once: true
|
||||
# volumes:
|
||||
# - /usr/share/elasticsearch/data
|
||||
- /opt/molgenis
|
|
@ -1,6 +1,6 @@
|
|||
.catalog:
|
||||
name: molgenis
|
||||
version: v6.0.0
|
||||
version: v4.1.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
|
@ -25,4 +25,4 @@
|
|||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
||||
response_timeout: 5000
|
|
@ -1,5 +1,5 @@
|
|||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:7.0.0-SNAPSHOT
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:5.2.0
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
|
@ -7,13 +7,6 @@
|
|||
- elasticsearch
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||
- "db_driver=org.postgresql.Driver"
|
||||
- "db_user=molgenis"
|
||||
- "db_password=molgenis"
|
||||
- "elasticsearch.cluster.name=molgenis"
|
||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.container.pull_image: always
|
||||
|
@ -38,11 +31,6 @@
|
|||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:7.0.0-SNAPSHOT
|
||||
ports:
|
||||
- 8004:8004
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
|
@ -59,9 +47,13 @@
|
|||
ports:
|
||||
- 9200:9200
|
||||
- 9300:9300
|
||||
labels:
|
||||
# labels:
|
||||
#io.rancher.sidekicks: elasticsearch-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:5.2.0
|
||||
ports:
|
||||
- 8004:8004
|
||||
|
||||
postgres-data:
|
||||
image: busybox
|
||||
|
@ -81,5 +73,7 @@
|
|||
# image: busybox
|
||||
# labels:
|
||||
# io.rancher.container.start_once: true
|
||||
# io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||
# io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||
# volumes:
|
||||
# - /usr/share/elasticsearch/data
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
.catalog:
|
||||
name: molgenis
|
||||
version: v7.0.0
|
||||
version: v5.2.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
|
@ -25,4 +25,4 @@
|
|||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
||||
response_timeout: 5000
|
|
@ -0,0 +1,16 @@
|
|||
# MOLGENIS
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network.
|
|
@ -0,0 +1,78 @@
|
|||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:6.0.0
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.container.pull_image: always
|
||||
io.rancher.scheduler.global: true
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=molgenis
|
||||
- POSTGRES_PASSWORD=molgenis
|
||||
- POSTGRES_DB=molgenis
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes_from:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
labels:
|
||||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=molgenis"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
# volumes_from:
|
||||
# - elasticsearch-data
|
||||
ports:
|
||||
- 9200:9200
|
||||
- 9300:9300
|
||||
labels:
|
||||
#io.rancher.sidekicks: elasticsearch-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:6.0.0
|
||||
ports:
|
||||
- 8004:8004
|
||||
|
||||
postgres-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /var/lib/postgresql/data/pgdata
|
||||
|
||||
molgenis-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /opt/molgenis
|
||||
|
||||
# elasticsearch-data:
|
||||
# image: busybox
|
||||
# labels:
|
||||
# io.rancher.container.start_once: true
|
||||
# volumes:
|
||||
# - /usr/share/elasticsearch/data
|
|
@ -0,0 +1,28 @@
|
|||
.catalog:
|
||||
name: molgenis
|
||||
version: v6.0.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
|
@ -0,0 +1,16 @@
|
|||
# MOLGENIS
|
||||
Flexible software for scientific data
|
||||
|
||||
## Rancher configuration
|
||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||
|
||||
- MOLGENIS
|
||||
- Postgress
|
||||
- ElasticSearch
|
||||
|
||||
## Usage
|
||||
- Select MOLGENIS from catalog
|
||||
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||
- Click *Launch*
|
||||
|
||||
MOLGENIS can now be accessed over the Rancher network.
|
|
@ -0,0 +1,85 @@
|
|||
molgenis:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis:7.0.0-SNAPSHOT
|
||||
ports:
|
||||
- 8080
|
||||
links:
|
||||
- postgres
|
||||
- elasticsearch
|
||||
volumes_from:
|
||||
- molgenis-data
|
||||
environment:
|
||||
- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||
- "db_driver=org.postgresql.Driver"
|
||||
- "db_user=molgenis"
|
||||
- "db_password=molgenis"
|
||||
- "elasticsearch.cluster.name=molgenis"
|
||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||
labels:
|
||||
io.rancher.sidekicks: molgenis-data
|
||||
io.rancher.container.pull_image: always
|
||||
io.rancher.scheduler.global: true
|
||||
traefik.frontend.rule: Host:${DOMAINS}
|
||||
traefik.backend: ${TRAEFIK_BACKEND}
|
||||
traefik.enable: true
|
||||
traefik.port: 8080
|
||||
|
||||
postgres:
|
||||
image: postgres:9.6-alpine
|
||||
environment:
|
||||
- POSTGRES_USER=molgenis
|
||||
- POSTGRES_PASSWORD=molgenis
|
||||
- POSTGRES_DB=molgenis
|
||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||
volumes_from:
|
||||
- postgres-data
|
||||
ports:
|
||||
- 5432
|
||||
labels:
|
||||
io.rancher.sidekicks: postgres-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
opencpu:
|
||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:7.0.0-SNAPSHOT
|
||||
ports:
|
||||
- 8004:8004
|
||||
|
||||
elasticsearch:
|
||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||
environment:
|
||||
- "cluster.name=molgenis"
|
||||
- "bootstrap.memory_lock=true"
|
||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||
- "xpack.security.enabled=false"
|
||||
ulimits:
|
||||
memlock:
|
||||
soft: -1
|
||||
hard: -1
|
||||
# volumes_from:
|
||||
# - elasticsearch-data
|
||||
ports:
|
||||
- 9200:9200
|
||||
- 9300:9300
|
||||
labels:
|
||||
#io.rancher.sidekicks: elasticsearch-data
|
||||
io.rancher.scheduler.global: true
|
||||
|
||||
postgres-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /var/lib/postgresql/data/pgdata
|
||||
|
||||
molgenis-data:
|
||||
image: busybox
|
||||
labels:
|
||||
io.rancher.container.start_once: true
|
||||
volumes:
|
||||
- /opt/molgenis
|
||||
|
||||
# elasticsearch-data:
|
||||
# image: busybox
|
||||
# labels:
|
||||
# io.rancher.container.start_once: true
|
||||
# volumes:
|
||||
# - /usr/share/elasticsearch/data
|
|
@ -0,0 +1,28 @@
|
|||
.catalog:
|
||||
name: molgenis
|
||||
version: v7.0.0
|
||||
description: Molgenis
|
||||
minimum_rancher_version: v1.6.3
|
||||
questions:
|
||||
- variable: "DOMAINS"
|
||||
description: "Domain you want to use (comma seperated)"
|
||||
label: "Domains:"
|
||||
required: true
|
||||
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||
type: "string"
|
||||
- variable: "TRAEFIK_BACKEND"
|
||||
description: "Name of the server when added to loadbalancer"
|
||||
label: "Backend:"
|
||||
required: true
|
||||
default: "test.molgenis.org"
|
||||
type: "string"
|
||||
|
||||
start_on_create: true
|
||||
scale: 1
|
||||
health_check:
|
||||
port: 8080
|
||||
interval: 5000
|
||||
unhealthy_threshold: 3
|
||||
request_line: 'GET / HTTP/1.0'
|
||||
healthy_threshold: 2
|
||||
response_timeout: 5000
|
Loading…
Reference in New Issue