chore(0 and 1): added latest and stable tag
This commit is contained in:
parent
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@ -1,17 +1,16 @@
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# MOLGENIS
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# MOLGENIS
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### Flexible software for scientific data
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Flexible software for scientific data
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#### Process, manage, query, annotate, integrate, analyse, share
|
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|
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## Rancher configuration
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This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
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This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
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|
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- MOLGENIS instance
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- MOLGENIS
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- Postgress instance
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- Postgress
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- ElasticSearch instance
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- ElasticSearch
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## Usage:
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## Usage
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- Select MOLGENIS from catalog
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- Select MOLGENIS from catalog
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- Enter the name of the replica set
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- The stack-name must not be altered (this is hardcoded in de docker-compose file)
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- Click deploy
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- Click *Launch*
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MOLGENIS can now be accessed over the Rancher network.
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MOLGENIS can now be accessed over the Rancher network.
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@ -1,21 +1,85 @@
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app:
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molgenis:
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image: registry.webhosting.rug.nl/molgenis:2.0.1
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image: registry.webhosting.rug.nl/molgenis/molgenis:stable
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ports:
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ports:
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- 8081:8080
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- 8080
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links:
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links:
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- db
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- postgres
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volumes:
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- elasticsearch
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- app-data:/opt/molgenis
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volumes_from:
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labels:
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- molgenis-data
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io.rancher.container.create_agent: true
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environment:
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io.rancher.scheduler.global: true
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- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
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traefik.frontend.rule: Host:${DOMAINS}
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- "db_driver=org.postgresql.Driver"
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traefik.backend: ${TRAEFIK_BACKEND}
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- "db_user=molgenis"
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traefik.enable: true
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- "db_password=molgenis"
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traefik.port: 8080
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- "elasticsearch.cluster.name=molgenis"
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db:
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- "elasticsearch.transport.addresses=elasticsearch:9300"
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image: registry.webhosting.rug.nl/molgenis-postgres:2.0.1
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labels:
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expose:
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io.rancher.sidekicks: molgenis-data
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- 5432
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io.rancher.container.pull_image: always
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volumes:
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io.rancher.scheduler.global: true
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- db-data:/var/lib/postgresql/data
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traefik.frontend.rule: Host:${DOMAINS}
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traefik.backend: ${TRAEFIK_BACKEND}
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traefik.enable: true
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traefik.port: 8080
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postgres:
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image: postgres:9.6-alpine
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environment:
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- POSTGRES_USER=molgenis
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- POSTGRES_PASSWORD=molgenis
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- POSTGRES_DB=molgenis
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- PGDATA=/var/lib/postgresql/data/pgdata
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volumes_from:
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- postgres-data
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ports:
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- 5432
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labels:
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io.rancher.sidekicks: postgres-data
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io.rancher.scheduler.global: true
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opencpu:
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image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:stable
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ports:
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- 8004:8004
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elasticsearch:
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image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
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environment:
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- "cluster.name=molgenis"
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- "bootstrap.memory_lock=true"
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- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
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- "xpack.security.enabled=false"
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ulimits:
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memlock:
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soft: -1
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hard: -1
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# volumes_from:
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# - elasticsearch-data
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ports:
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- 9200:9200
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- 9300:9300
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labels:
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#io.rancher.sidekicks: elasticsearch-data
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io.rancher.scheduler.global: true
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postgres-data:
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image: busybox
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labels:
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io.rancher.container.start_once: true
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volumes:
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- /var/lib/postgresql/data/pgdata
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molgenis-data:
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image: busybox
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labels:
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io.rancher.container.start_once: true
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volumes:
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- /opt/molgenis
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# elasticsearch-data:
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# image: busybox
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# labels:
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||||||
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# io.rancher.container.start_once: true
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# volumes:
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# - /usr/share/elasticsearch/data
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@ -1,6 +1,6 @@
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.catalog:
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.catalog:
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name: molgenis
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name: molgenis
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version: v2.0.0
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version: latest
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description: Molgenis
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description: Molgenis
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minimum_rancher_version: v1.6.3
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minimum_rancher_version: v1.6.3
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questions:
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questions:
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@ -25,4 +25,4 @@
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unhealthy_threshold: 3
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unhealthy_threshold: 3
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request_line: 'GET / HTTP/1.0'
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request_line: 'GET / HTTP/1.0'
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healthy_threshold: 2
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healthy_threshold: 2
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response_timeout: 5000
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response_timeout: 5000
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@ -1,13 +1,12 @@
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|||||||
# MOLGENIS
|
# MOLGENIS
|
||||||
|
|
||||||
Flexible software for scientific data
|
Flexible software for scientific data
|
||||||
|
|
||||||
## Rancher configuration
|
## Rancher configuration
|
||||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||||
|
|
||||||
- MOLGENIS
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- MOLGENIS
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- Elasticsearch is packaged with MOLGENIS
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- Postgress
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- Postgress
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||||||
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- ElasticSearch
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||||||
|
|
||||||
## Usage
|
## Usage
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||||||
- Select MOLGENIS from catalog
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- Select MOLGENIS from catalog
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@ -1,42 +1,85 @@
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app:
|
molgenis:
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image: registry.webhosting.rug.nl/molgenis/molgenis:4.1.0
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image: registry.webhosting.rug.nl/molgenis/molgenis:latest
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||||||
ports:
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ports:
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||||||
- 8081:8080
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- 8080
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||||||
links:
|
links:
|
||||||
- db
|
- postgres
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||||||
volumes_from:
|
- elasticsearch
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||||||
- molgenis-data
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volumes_from:
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labels:
|
- molgenis-data
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io.rancher.sidekicks: molgenis-data
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environment:
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||||||
io.rancher.scheduler.global: true
|
- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||||
traefik.frontend.rule: Host:${DOMAINS}
|
- "db_driver=org.postgresql.Driver"
|
||||||
traefik.backend: ${TRAEFIK_BACKEND}
|
- "db_user=molgenis"
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||||||
traefik.enable: true
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- "db_password=molgenis"
|
||||||
traefik.port: 8080
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- "elasticsearch.cluster.name=molgenis"
|
||||||
|
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||||
|
labels:
|
||||||
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io.rancher.sidekicks: molgenis-data
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||||||
|
io.rancher.container.pull_image: always
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||||||
|
io.rancher.scheduler.global: true
|
||||||
|
traefik.frontend.rule: Host:${DOMAINS}
|
||||||
|
traefik.backend: ${TRAEFIK_BACKEND}
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||||||
|
traefik.enable: true
|
||||||
|
traefik.port: 8080
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||||||
|
|
||||||
db:
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postgres:
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image: postgres:9.6-alpine
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image: postgres:9.6-alpine
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environment:
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environment:
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||||||
- POSTGRES_USER=molgenis
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- POSTGRES_USER=molgenis
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- POSTGRES_PASSWORD=molgenis
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- POSTGRES_PASSWORD=molgenis
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||||||
- POSTGRES_DB=molgenis
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- POSTGRES_DB=molgenis
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||||||
expose:
|
- PGDATA=/var/lib/postgresql/data/pgdata
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||||||
- 5432
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volumes_from:
|
||||||
volumes_from:
|
|
||||||
- postgres-data
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- postgres-data
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||||||
|
ports:
|
||||||
|
- 5432
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||||||
labels:
|
labels:
|
||||||
io.rancher.sidekicks: postgres-data
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io.rancher.sidekicks: postgres-data
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||||||
io.rancher.scheduler.global: true
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io.rancher.scheduler.global: true
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||||||
|
|
||||||
postgres-data:
|
opencpu:
|
||||||
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image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:latest
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||||||
|
ports:
|
||||||
|
- 8004:8004
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||||||
|
|
||||||
|
elasticsearch:
|
||||||
|
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||||
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environment:
|
||||||
|
- "cluster.name=molgenis"
|
||||||
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- "bootstrap.memory_lock=true"
|
||||||
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- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||||
|
- "xpack.security.enabled=false"
|
||||||
|
ulimits:
|
||||||
|
memlock:
|
||||||
|
soft: -1
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||||||
|
hard: -1
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||||||
|
# volumes_from:
|
||||||
|
# - elasticsearch-data
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||||||
|
ports:
|
||||||
|
- 9200:9200
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||||||
|
- 9300:9300
|
||||||
|
labels:
|
||||||
|
#io.rancher.sidekicks: elasticsearch-data
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||||||
|
io.rancher.scheduler.global: true
|
||||||
|
|
||||||
|
postgres-data:
|
||||||
image: busybox
|
image: busybox
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||||||
labels:
|
labels:
|
||||||
io.rancher.container.start_once: true
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io.rancher.container.start_once: true
|
||||||
volumes:
|
volumes:
|
||||||
- /var/lib/postgresql/data/pgdata
|
- /var/lib/postgresql/data/pgdata
|
||||||
|
|
||||||
molgenis-data:
|
molgenis-data:
|
||||||
image: busybox
|
image: busybox
|
||||||
labels:
|
labels:
|
||||||
io.rancher.container.start_once: true
|
io.rancher.container.start_once: true
|
||||||
volumes:
|
volumes:
|
||||||
- /opt/molgenis
|
- /opt/molgenis
|
||||||
|
|
||||||
|
# elasticsearch-data:
|
||||||
|
# image: busybox
|
||||||
|
# labels:
|
||||||
|
# io.rancher.container.start_once: true
|
||||||
|
# volumes:
|
||||||
|
# - /usr/share/elasticsearch/data
|
||||||
|
@ -1,6 +1,6 @@
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.catalog:
|
.catalog:
|
||||||
name: molgenis
|
name: molgenis
|
||||||
version: v4.1.0
|
version: stable
|
||||||
description: Molgenis
|
description: Molgenis
|
||||||
minimum_rancher_version: v1.6.3
|
minimum_rancher_version: v1.6.3
|
||||||
questions:
|
questions:
|
||||||
@ -25,4 +25,4 @@
|
|||||||
unhealthy_threshold: 3
|
unhealthy_threshold: 3
|
||||||
request_line: 'GET / HTTP/1.0'
|
request_line: 'GET / HTTP/1.0'
|
||||||
healthy_threshold: 2
|
healthy_threshold: 2
|
||||||
response_timeout: 5000
|
response_timeout: 5000
|
||||||
|
@ -1,16 +1,17 @@
|
|||||||
# MOLGENIS
|
# MOLGENIS
|
||||||
Flexible software for scientific data
|
### Flexible software for scientific data
|
||||||
|
#### Process, manage, query, annotate, integrate, analyse, share
|
||||||
|
|
||||||
## Rancher configuration
|
|
||||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||||
|
|
||||||
- MOLGENIS
|
- MOLGENIS instance
|
||||||
- Postgress
|
- Postgress instance
|
||||||
- ElasticSearch
|
- ElasticSearch instance
|
||||||
|
|
||||||
|
## Usage:
|
||||||
|
|
||||||
## Usage
|
|
||||||
- Select MOLGENIS from catalog
|
- Select MOLGENIS from catalog
|
||||||
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
- Enter the name of the replica set
|
||||||
- Click *Launch*
|
- Click deploy
|
||||||
|
|
||||||
MOLGENIS can now be accessed over the Rancher network.
|
MOLGENIS can now be accessed over the Rancher network.
|
@ -1,79 +1,21 @@
|
|||||||
molgenis:
|
app:
|
||||||
image: registry.webhosting.rug.nl/molgenis/molgenis:5.2.0
|
image: registry.webhosting.rug.nl/molgenis:2.0.1
|
||||||
ports:
|
ports:
|
||||||
- 8080
|
- 8081:8080
|
||||||
links:
|
links:
|
||||||
- postgres
|
- db
|
||||||
- elasticsearch
|
volumes:
|
||||||
volumes_from:
|
- app-data:/opt/molgenis
|
||||||
- molgenis-data
|
labels:
|
||||||
labels:
|
io.rancher.container.create_agent: true
|
||||||
io.rancher.sidekicks: molgenis-data
|
io.rancher.scheduler.global: true
|
||||||
io.rancher.container.pull_image: always
|
traefik.frontend.rule: Host:${DOMAINS}
|
||||||
io.rancher.scheduler.global: true
|
traefik.backend: ${TRAEFIK_BACKEND}
|
||||||
traefik.frontend.rule: Host:${DOMAINS}
|
traefik.enable: true
|
||||||
traefik.backend: ${TRAEFIK_BACKEND}
|
traefik.port: 8080
|
||||||
traefik.enable: true
|
db:
|
||||||
traefik.port: 8080
|
image: registry.webhosting.rug.nl/molgenis-postgres:2.0.1
|
||||||
|
expose:
|
||||||
postgres:
|
- 5432
|
||||||
image: postgres:9.6-alpine
|
volumes:
|
||||||
environment:
|
- db-data:/var/lib/postgresql/data
|
||||||
- POSTGRES_USER=molgenis
|
|
||||||
- POSTGRES_PASSWORD=molgenis
|
|
||||||
- POSTGRES_DB=molgenis
|
|
||||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
|
||||||
volumes_from:
|
|
||||||
- postgres-data
|
|
||||||
ports:
|
|
||||||
- 5432
|
|
||||||
labels:
|
|
||||||
io.rancher.sidekicks: postgres-data
|
|
||||||
io.rancher.scheduler.global: true
|
|
||||||
|
|
||||||
elasticsearch:
|
|
||||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
|
||||||
environment:
|
|
||||||
- "cluster.name=molgenis"
|
|
||||||
- "bootstrap.memory_lock=true"
|
|
||||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
|
||||||
- "xpack.security.enabled=false"
|
|
||||||
ulimits:
|
|
||||||
memlock:
|
|
||||||
soft: -1
|
|
||||||
hard: -1
|
|
||||||
# volumes_from:
|
|
||||||
# - elasticsearch-data
|
|
||||||
ports:
|
|
||||||
- 9200:9200
|
|
||||||
- 9300:9300
|
|
||||||
# labels:
|
|
||||||
#io.rancher.sidekicks: elasticsearch-data
|
|
||||||
|
|
||||||
opencpu:
|
|
||||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:5.2.0
|
|
||||||
ports:
|
|
||||||
- 8004:8004
|
|
||||||
|
|
||||||
postgres-data:
|
|
||||||
image: busybox
|
|
||||||
labels:
|
|
||||||
io.rancher.container.start_once: true
|
|
||||||
volumes:
|
|
||||||
- /var/lib/postgresql/data/pgdata
|
|
||||||
|
|
||||||
molgenis-data:
|
|
||||||
image: busybox
|
|
||||||
labels:
|
|
||||||
io.rancher.container.start_once: true
|
|
||||||
volumes:
|
|
||||||
- /opt/molgenis
|
|
||||||
|
|
||||||
# elasticsearch-data:
|
|
||||||
# image: busybox
|
|
||||||
# labels:
|
|
||||||
# io.rancher.container.start_once: true
|
|
||||||
# io.rancher.scheduler.affinity:host_label: type=molgenis
|
|
||||||
# io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
|
||||||
# volumes:
|
|
||||||
# - /usr/share/elasticsearch/data
|
|
||||||
|
@ -1,6 +1,6 @@
|
|||||||
.catalog:
|
.catalog:
|
||||||
name: molgenis
|
name: molgenis
|
||||||
version: v5.2.0
|
version: v2.0.0
|
||||||
description: Molgenis
|
description: Molgenis
|
||||||
minimum_rancher_version: v1.6.3
|
minimum_rancher_version: v1.6.3
|
||||||
questions:
|
questions:
|
||||||
|
@ -1,12 +1,13 @@
|
|||||||
# MOLGENIS
|
# MOLGENIS
|
||||||
|
|
||||||
Flexible software for scientific data
|
Flexible software for scientific data
|
||||||
|
|
||||||
## Rancher configuration
|
## Rancher configuration
|
||||||
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||||
|
|
||||||
- MOLGENIS
|
- MOLGENIS
|
||||||
|
- Elasticsearch is packaged with MOLGENIS
|
||||||
- Postgress
|
- Postgress
|
||||||
- ElasticSearch
|
|
||||||
|
|
||||||
## Usage
|
## Usage
|
||||||
- Select MOLGENIS from catalog
|
- Select MOLGENIS from catalog
|
||||||
|
@ -1,78 +1,42 @@
|
|||||||
molgenis:
|
app:
|
||||||
image: registry.webhosting.rug.nl/molgenis/molgenis:6.0.0
|
image: registry.webhosting.rug.nl/molgenis/molgenis:4.1.0
|
||||||
ports:
|
ports:
|
||||||
- 8080
|
- 8081:8080
|
||||||
links:
|
links:
|
||||||
- postgres
|
- db
|
||||||
- elasticsearch
|
volumes_from:
|
||||||
volumes_from:
|
- molgenis-data
|
||||||
- molgenis-data
|
labels:
|
||||||
labels:
|
io.rancher.sidekicks: molgenis-data
|
||||||
io.rancher.sidekicks: molgenis-data
|
io.rancher.scheduler.global: true
|
||||||
io.rancher.container.pull_image: always
|
traefik.frontend.rule: Host:${DOMAINS}
|
||||||
io.rancher.scheduler.global: true
|
traefik.backend: ${TRAEFIK_BACKEND}
|
||||||
traefik.frontend.rule: Host:${DOMAINS}
|
traefik.enable: true
|
||||||
traefik.backend: ${TRAEFIK_BACKEND}
|
traefik.port: 8080
|
||||||
traefik.enable: true
|
|
||||||
traefik.port: 8080
|
|
||||||
|
|
||||||
postgres:
|
db:
|
||||||
image: postgres:9.6-alpine
|
image: postgres:9.6-alpine
|
||||||
environment:
|
environment:
|
||||||
- POSTGRES_USER=molgenis
|
- POSTGRES_USER=molgenis
|
||||||
- POSTGRES_PASSWORD=molgenis
|
- POSTGRES_PASSWORD=molgenis
|
||||||
- POSTGRES_DB=molgenis
|
- POSTGRES_DB=molgenis
|
||||||
- PGDATA=/var/lib/postgresql/data/pgdata
|
expose:
|
||||||
volumes_from:
|
|
||||||
- postgres-data
|
|
||||||
ports:
|
|
||||||
- 5432
|
- 5432
|
||||||
|
volumes_from:
|
||||||
|
- postgres-data
|
||||||
labels:
|
labels:
|
||||||
io.rancher.sidekicks: postgres-data
|
io.rancher.sidekicks: postgres-data
|
||||||
io.rancher.scheduler.global: true
|
io.rancher.scheduler.global: true
|
||||||
|
|
||||||
elasticsearch:
|
postgres-data:
|
||||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
|
||||||
environment:
|
|
||||||
- "cluster.name=molgenis"
|
|
||||||
- "bootstrap.memory_lock=true"
|
|
||||||
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
|
||||||
- "xpack.security.enabled=false"
|
|
||||||
ulimits:
|
|
||||||
memlock:
|
|
||||||
soft: -1
|
|
||||||
hard: -1
|
|
||||||
# volumes_from:
|
|
||||||
# - elasticsearch-data
|
|
||||||
ports:
|
|
||||||
- 9200:9200
|
|
||||||
- 9300:9300
|
|
||||||
labels:
|
|
||||||
#io.rancher.sidekicks: elasticsearch-data
|
|
||||||
io.rancher.scheduler.global: true
|
|
||||||
|
|
||||||
opencpu:
|
|
||||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:6.0.0
|
|
||||||
ports:
|
|
||||||
- 8004:8004
|
|
||||||
|
|
||||||
postgres-data:
|
|
||||||
image: busybox
|
image: busybox
|
||||||
labels:
|
labels:
|
||||||
io.rancher.container.start_once: true
|
io.rancher.container.start_once: true
|
||||||
volumes:
|
volumes:
|
||||||
- /var/lib/postgresql/data/pgdata
|
- /var/lib/postgresql/data/pgdata
|
||||||
|
|
||||||
molgenis-data:
|
molgenis-data:
|
||||||
image: busybox
|
image: busybox
|
||||||
labels:
|
labels:
|
||||||
io.rancher.container.start_once: true
|
io.rancher.container.start_once: true
|
||||||
volumes:
|
volumes:
|
||||||
- /opt/molgenis
|
- /opt/molgenis
|
||||||
|
|
||||||
# elasticsearch-data:
|
|
||||||
# image: busybox
|
|
||||||
# labels:
|
|
||||||
# io.rancher.container.start_once: true
|
|
||||||
# volumes:
|
|
||||||
# - /usr/share/elasticsearch/data
|
|
@ -1,6 +1,6 @@
|
|||||||
.catalog:
|
.catalog:
|
||||||
name: molgenis
|
name: molgenis
|
||||||
version: v6.0.0
|
version: v4.1.0
|
||||||
description: Molgenis
|
description: Molgenis
|
||||||
minimum_rancher_version: v1.6.3
|
minimum_rancher_version: v1.6.3
|
||||||
questions:
|
questions:
|
||||||
@ -25,4 +25,4 @@
|
|||||||
unhealthy_threshold: 3
|
unhealthy_threshold: 3
|
||||||
request_line: 'GET / HTTP/1.0'
|
request_line: 'GET / HTTP/1.0'
|
||||||
healthy_threshold: 2
|
healthy_threshold: 2
|
||||||
response_timeout: 5000
|
response_timeout: 5000
|
@ -1,5 +1,5 @@
|
|||||||
molgenis:
|
molgenis:
|
||||||
image: registry.webhosting.rug.nl/molgenis/molgenis:7.0.0-SNAPSHOT
|
image: registry.webhosting.rug.nl/molgenis/molgenis:5.2.0
|
||||||
ports:
|
ports:
|
||||||
- 8080
|
- 8080
|
||||||
links:
|
links:
|
||||||
@ -7,13 +7,6 @@
|
|||||||
- elasticsearch
|
- elasticsearch
|
||||||
volumes_from:
|
volumes_from:
|
||||||
- molgenis-data
|
- molgenis-data
|
||||||
environment:
|
|
||||||
- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
|
||||||
- "db_driver=org.postgresql.Driver"
|
|
||||||
- "db_user=molgenis"
|
|
||||||
- "db_password=molgenis"
|
|
||||||
- "elasticsearch.cluster.name=molgenis"
|
|
||||||
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
|
||||||
labels:
|
labels:
|
||||||
io.rancher.sidekicks: molgenis-data
|
io.rancher.sidekicks: molgenis-data
|
||||||
io.rancher.container.pull_image: always
|
io.rancher.container.pull_image: always
|
||||||
@ -38,11 +31,6 @@
|
|||||||
io.rancher.sidekicks: postgres-data
|
io.rancher.sidekicks: postgres-data
|
||||||
io.rancher.scheduler.global: true
|
io.rancher.scheduler.global: true
|
||||||
|
|
||||||
opencpu:
|
|
||||||
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:7.0.0-SNAPSHOT
|
|
||||||
ports:
|
|
||||||
- 8004:8004
|
|
||||||
|
|
||||||
elasticsearch:
|
elasticsearch:
|
||||||
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||||
environment:
|
environment:
|
||||||
@ -59,9 +47,13 @@
|
|||||||
ports:
|
ports:
|
||||||
- 9200:9200
|
- 9200:9200
|
||||||
- 9300:9300
|
- 9300:9300
|
||||||
labels:
|
# labels:
|
||||||
#io.rancher.sidekicks: elasticsearch-data
|
#io.rancher.sidekicks: elasticsearch-data
|
||||||
io.rancher.scheduler.global: true
|
|
||||||
|
opencpu:
|
||||||
|
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:5.2.0
|
||||||
|
ports:
|
||||||
|
- 8004:8004
|
||||||
|
|
||||||
postgres-data:
|
postgres-data:
|
||||||
image: busybox
|
image: busybox
|
||||||
@ -81,5 +73,7 @@
|
|||||||
# image: busybox
|
# image: busybox
|
||||||
# labels:
|
# labels:
|
||||||
# io.rancher.container.start_once: true
|
# io.rancher.container.start_once: true
|
||||||
|
# io.rancher.scheduler.affinity:host_label: type=molgenis
|
||||||
|
# io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
|
||||||
# volumes:
|
# volumes:
|
||||||
# - /usr/share/elasticsearch/data
|
# - /usr/share/elasticsearch/data
|
||||||
|
@ -1,6 +1,6 @@
|
|||||||
.catalog:
|
.catalog:
|
||||||
name: molgenis
|
name: molgenis
|
||||||
version: v7.0.0
|
version: v5.2.0
|
||||||
description: Molgenis
|
description: Molgenis
|
||||||
minimum_rancher_version: v1.6.3
|
minimum_rancher_version: v1.6.3
|
||||||
questions:
|
questions:
|
||||||
@ -25,4 +25,4 @@
|
|||||||
unhealthy_threshold: 3
|
unhealthy_threshold: 3
|
||||||
request_line: 'GET / HTTP/1.0'
|
request_line: 'GET / HTTP/1.0'
|
||||||
healthy_threshold: 2
|
healthy_threshold: 2
|
||||||
response_timeout: 5000
|
response_timeout: 5000
|
16
templates/molgenis/5/README.md
Normal file
16
templates/molgenis/5/README.md
Normal file
@ -0,0 +1,16 @@
|
|||||||
|
# MOLGENIS
|
||||||
|
Flexible software for scientific data
|
||||||
|
|
||||||
|
## Rancher configuration
|
||||||
|
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||||
|
|
||||||
|
- MOLGENIS
|
||||||
|
- Postgress
|
||||||
|
- ElasticSearch
|
||||||
|
|
||||||
|
## Usage
|
||||||
|
- Select MOLGENIS from catalog
|
||||||
|
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||||
|
- Click *Launch*
|
||||||
|
|
||||||
|
MOLGENIS can now be accessed over the Rancher network.
|
78
templates/molgenis/5/docker-compose.yml
Normal file
78
templates/molgenis/5/docker-compose.yml
Normal file
@ -0,0 +1,78 @@
|
|||||||
|
molgenis:
|
||||||
|
image: registry.webhosting.rug.nl/molgenis/molgenis:6.0.0
|
||||||
|
ports:
|
||||||
|
- 8080
|
||||||
|
links:
|
||||||
|
- postgres
|
||||||
|
- elasticsearch
|
||||||
|
volumes_from:
|
||||||
|
- molgenis-data
|
||||||
|
labels:
|
||||||
|
io.rancher.sidekicks: molgenis-data
|
||||||
|
io.rancher.container.pull_image: always
|
||||||
|
io.rancher.scheduler.global: true
|
||||||
|
traefik.frontend.rule: Host:${DOMAINS}
|
||||||
|
traefik.backend: ${TRAEFIK_BACKEND}
|
||||||
|
traefik.enable: true
|
||||||
|
traefik.port: 8080
|
||||||
|
|
||||||
|
postgres:
|
||||||
|
image: postgres:9.6-alpine
|
||||||
|
environment:
|
||||||
|
- POSTGRES_USER=molgenis
|
||||||
|
- POSTGRES_PASSWORD=molgenis
|
||||||
|
- POSTGRES_DB=molgenis
|
||||||
|
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||||
|
volumes_from:
|
||||||
|
- postgres-data
|
||||||
|
ports:
|
||||||
|
- 5432
|
||||||
|
labels:
|
||||||
|
io.rancher.sidekicks: postgres-data
|
||||||
|
io.rancher.scheduler.global: true
|
||||||
|
|
||||||
|
elasticsearch:
|
||||||
|
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||||
|
environment:
|
||||||
|
- "cluster.name=molgenis"
|
||||||
|
- "bootstrap.memory_lock=true"
|
||||||
|
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||||
|
- "xpack.security.enabled=false"
|
||||||
|
ulimits:
|
||||||
|
memlock:
|
||||||
|
soft: -1
|
||||||
|
hard: -1
|
||||||
|
# volumes_from:
|
||||||
|
# - elasticsearch-data
|
||||||
|
ports:
|
||||||
|
- 9200:9200
|
||||||
|
- 9300:9300
|
||||||
|
labels:
|
||||||
|
#io.rancher.sidekicks: elasticsearch-data
|
||||||
|
io.rancher.scheduler.global: true
|
||||||
|
|
||||||
|
opencpu:
|
||||||
|
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:6.0.0
|
||||||
|
ports:
|
||||||
|
- 8004:8004
|
||||||
|
|
||||||
|
postgres-data:
|
||||||
|
image: busybox
|
||||||
|
labels:
|
||||||
|
io.rancher.container.start_once: true
|
||||||
|
volumes:
|
||||||
|
- /var/lib/postgresql/data/pgdata
|
||||||
|
|
||||||
|
molgenis-data:
|
||||||
|
image: busybox
|
||||||
|
labels:
|
||||||
|
io.rancher.container.start_once: true
|
||||||
|
volumes:
|
||||||
|
- /opt/molgenis
|
||||||
|
|
||||||
|
# elasticsearch-data:
|
||||||
|
# image: busybox
|
||||||
|
# labels:
|
||||||
|
# io.rancher.container.start_once: true
|
||||||
|
# volumes:
|
||||||
|
# - /usr/share/elasticsearch/data
|
28
templates/molgenis/5/rancher-compose.yml
Normal file
28
templates/molgenis/5/rancher-compose.yml
Normal file
@ -0,0 +1,28 @@
|
|||||||
|
.catalog:
|
||||||
|
name: molgenis
|
||||||
|
version: v6.0.0
|
||||||
|
description: Molgenis
|
||||||
|
minimum_rancher_version: v1.6.3
|
||||||
|
questions:
|
||||||
|
- variable: "DOMAINS"
|
||||||
|
description: "Domain you want to use (comma seperated)"
|
||||||
|
label: "Domains:"
|
||||||
|
required: true
|
||||||
|
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||||
|
type: "string"
|
||||||
|
- variable: "TRAEFIK_BACKEND"
|
||||||
|
description: "Name of the server when added to loadbalancer"
|
||||||
|
label: "Backend:"
|
||||||
|
required: true
|
||||||
|
default: "test.molgenis.org"
|
||||||
|
type: "string"
|
||||||
|
|
||||||
|
start_on_create: true
|
||||||
|
scale: 1
|
||||||
|
health_check:
|
||||||
|
port: 8080
|
||||||
|
interval: 5000
|
||||||
|
unhealthy_threshold: 3
|
||||||
|
request_line: 'GET / HTTP/1.0'
|
||||||
|
healthy_threshold: 2
|
||||||
|
response_timeout: 5000
|
16
templates/molgenis/6/README.md
Normal file
16
templates/molgenis/6/README.md
Normal file
@ -0,0 +1,16 @@
|
|||||||
|
# MOLGENIS
|
||||||
|
Flexible software for scientific data
|
||||||
|
|
||||||
|
## Rancher configuration
|
||||||
|
This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
|
||||||
|
|
||||||
|
- MOLGENIS
|
||||||
|
- Postgress
|
||||||
|
- ElasticSearch
|
||||||
|
|
||||||
|
## Usage
|
||||||
|
- Select MOLGENIS from catalog
|
||||||
|
- The stack-name must not be altered (this is hardcoded in de docker-compose file)
|
||||||
|
- Click *Launch*
|
||||||
|
|
||||||
|
MOLGENIS can now be accessed over the Rancher network.
|
85
templates/molgenis/6/docker-compose.yml
Normal file
85
templates/molgenis/6/docker-compose.yml
Normal file
@ -0,0 +1,85 @@
|
|||||||
|
molgenis:
|
||||||
|
image: registry.webhosting.rug.nl/molgenis/molgenis:7.0.0-SNAPSHOT
|
||||||
|
ports:
|
||||||
|
- 8080
|
||||||
|
links:
|
||||||
|
- postgres
|
||||||
|
- elasticsearch
|
||||||
|
volumes_from:
|
||||||
|
- molgenis-data
|
||||||
|
environment:
|
||||||
|
- "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
|
||||||
|
- "db_driver=org.postgresql.Driver"
|
||||||
|
- "db_user=molgenis"
|
||||||
|
- "db_password=molgenis"
|
||||||
|
- "elasticsearch.cluster.name=molgenis"
|
||||||
|
- "elasticsearch.transport.addresses=elasticsearch:9300"
|
||||||
|
labels:
|
||||||
|
io.rancher.sidekicks: molgenis-data
|
||||||
|
io.rancher.container.pull_image: always
|
||||||
|
io.rancher.scheduler.global: true
|
||||||
|
traefik.frontend.rule: Host:${DOMAINS}
|
||||||
|
traefik.backend: ${TRAEFIK_BACKEND}
|
||||||
|
traefik.enable: true
|
||||||
|
traefik.port: 8080
|
||||||
|
|
||||||
|
postgres:
|
||||||
|
image: postgres:9.6-alpine
|
||||||
|
environment:
|
||||||
|
- POSTGRES_USER=molgenis
|
||||||
|
- POSTGRES_PASSWORD=molgenis
|
||||||
|
- POSTGRES_DB=molgenis
|
||||||
|
- PGDATA=/var/lib/postgresql/data/pgdata
|
||||||
|
volumes_from:
|
||||||
|
- postgres-data
|
||||||
|
ports:
|
||||||
|
- 5432
|
||||||
|
labels:
|
||||||
|
io.rancher.sidekicks: postgres-data
|
||||||
|
io.rancher.scheduler.global: true
|
||||||
|
|
||||||
|
opencpu:
|
||||||
|
image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:7.0.0-SNAPSHOT
|
||||||
|
ports:
|
||||||
|
- 8004:8004
|
||||||
|
|
||||||
|
elasticsearch:
|
||||||
|
image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
|
||||||
|
environment:
|
||||||
|
- "cluster.name=molgenis"
|
||||||
|
- "bootstrap.memory_lock=true"
|
||||||
|
- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
|
||||||
|
- "xpack.security.enabled=false"
|
||||||
|
ulimits:
|
||||||
|
memlock:
|
||||||
|
soft: -1
|
||||||
|
hard: -1
|
||||||
|
# volumes_from:
|
||||||
|
# - elasticsearch-data
|
||||||
|
ports:
|
||||||
|
- 9200:9200
|
||||||
|
- 9300:9300
|
||||||
|
labels:
|
||||||
|
#io.rancher.sidekicks: elasticsearch-data
|
||||||
|
io.rancher.scheduler.global: true
|
||||||
|
|
||||||
|
postgres-data:
|
||||||
|
image: busybox
|
||||||
|
labels:
|
||||||
|
io.rancher.container.start_once: true
|
||||||
|
volumes:
|
||||||
|
- /var/lib/postgresql/data/pgdata
|
||||||
|
|
||||||
|
molgenis-data:
|
||||||
|
image: busybox
|
||||||
|
labels:
|
||||||
|
io.rancher.container.start_once: true
|
||||||
|
volumes:
|
||||||
|
- /opt/molgenis
|
||||||
|
|
||||||
|
# elasticsearch-data:
|
||||||
|
# image: busybox
|
||||||
|
# labels:
|
||||||
|
# io.rancher.container.start_once: true
|
||||||
|
# volumes:
|
||||||
|
# - /usr/share/elasticsearch/data
|
28
templates/molgenis/6/rancher-compose.yml
Normal file
28
templates/molgenis/6/rancher-compose.yml
Normal file
@ -0,0 +1,28 @@
|
|||||||
|
.catalog:
|
||||||
|
name: molgenis
|
||||||
|
version: v7.0.0
|
||||||
|
description: Molgenis
|
||||||
|
minimum_rancher_version: v1.6.3
|
||||||
|
questions:
|
||||||
|
- variable: "DOMAINS"
|
||||||
|
description: "Domain you want to use (comma seperated)"
|
||||||
|
label: "Domains:"
|
||||||
|
required: true
|
||||||
|
default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
|
||||||
|
type: "string"
|
||||||
|
- variable: "TRAEFIK_BACKEND"
|
||||||
|
description: "Name of the server when added to loadbalancer"
|
||||||
|
label: "Backend:"
|
||||||
|
required: true
|
||||||
|
default: "test.molgenis.org"
|
||||||
|
type: "string"
|
||||||
|
|
||||||
|
start_on_create: true
|
||||||
|
scale: 1
|
||||||
|
health_check:
|
||||||
|
port: 8080
|
||||||
|
interval: 5000
|
||||||
|
unhealthy_threshold: 3
|
||||||
|
request_line: 'GET / HTTP/1.0'
|
||||||
|
healthy_threshold: 2
|
||||||
|
response_timeout: 5000
|
Loading…
Reference in New Issue
Block a user