Merge branch 'master' of p281392/thirdparty-ops-docker-helm into master

README.md

@@ -1,6 +1,6 @@
 # Third party - Helm templates
 
-These are the Helm templates that we will use for MOLGENIS operations. 
+These are the Helm templates that we will use for third-party operations. 
  
 ## Kubernetes
 When you want to use kubernetes there are some commands you need to know. Also running on a remote cluster will be a must have to control your whole DTAP.
@@ -76,6 +76,8 @@ Commands that can be used to get information from a kubernetes cluster
 This repository is serves also as a catalogue for Rancher. We have several apps that are served through this repository. e.g.
 
 - [Opal](charts/opal/README.md)
+- [RStudio](charts/rstudio/README.md)
+- [MOLGENIS website](charts/website/README.md)
 
 ### Useful commands
 You can you need to know to easily develop and deploy helm-charts

charts/molgenis-website/Chart.yaml

@@ -1,12 +1,12 @@
 apiVersion: v1
 appVersion: "1.0"
-description: Opal - helm stack (in BETA)
-name: opal
-version: 0.0.1
+description: MOLGENIS Helm chart for the website
+name: molgenis-website
+version: 0.3.3
 sources:
 - https://git.webhosting.rug.nl/molgenis/thirdparty-ops-docker-helm.git
-icon: https://git.webhosting.rug.nl/molgenis/thirdparty-ops-docker-helm/
-home: https://obiba.org
+icon: https://git.webhosting.rug.nl/molgenis/thirdparty-ops-docker-helm/raw/master/charts/molgenis-website/catalogIcon-molgenis-website.png
+home: https://www.molgenis.org
 maintainers:
 - name: sidohaakma
 - name: fdlk

charts/molgenis-website/README.md

@@ -1,6 +1,6 @@
-# MOLGENIS - OpenCPU Helm Chart
+# MOLGENIS - Website Helm Chart
 
-NEXUS repository for kubernetes to deploy on a kubernetes cluster with NFS-share
+Website Helm chart to deploy the molgenis.org website.
 
 ## Containers
 
@@ -9,7 +9,7 @@ This chart will deploy the following containers:
 - NGINX
 
 ## Provisioning
-You can choose for the OpenCPU image from which repository you want to pull. Experimental builds are pushed to registry.molgenis.org and the stable builds to hub.docker.com. 
+You can choose which version of the NGINX image you want to deploy. Each merge with the master results in a tagged image with the build-number.  
 You need to fill out 2 properties to determine which repository you are going to use.
 
 - ```site.image.repository```

charts/molgenis-website/questions.yml

@@ -0,0 +1,18 @@
+
+categories:
+- MOLGENIS
+questions:
+- variable: ingress.hosts[0].name
+  label: Hostname(s)
+  default: "site.dev.molgenis.org"
+  description: "Specify a hostname for this MOLGENIS website instance"
+  type: string
+  required: true
+  group: "Loadbalancing"
+- variable: image.image.tag
+  label: Version
+  default: "latest"
+  description: "Select a MOLGENIS website version (check the registry.molgenis.org for released tags)"
+  type: string
+  required: true
+  group: "Provisioning"

charts/molgenis-website/templates/ingress.yaml

@@ -1,5 +1,4 @@
 {{- if .Values.ingress.enabled }}
-{{- range .Values.ingress.hosts }}
 apiVersion: extensions/v1beta1
 kind: Ingress
 metadata:
@@ -10,27 +9,30 @@ metadata:
     release: "{{ $.Release.Name }}"
     heritage: "{{ $.Release.Service }}"
   annotations:
-    {{- if .tls }}
+    {{- if .Values.ingress.tls }}
     ingress.kubernetes.io/secure-backends: "true"
     {{- end }}
-    {{- range $key, $value := .annotations }}
+    {{- range $key, $value := .Values.ingress.annotations }}
     {{ $key }}: {{ $value | quote }}
     {{- end }}
 spec:
   rules:
+  {{- range .Values.ingress.hosts }}
   - host: {{ .name }}
     http:
       paths:
         - path: {{ default "/" .path }}
           backend:
-            serviceName: {{ $.Values.website.service.name }}
+            serviceName: {{ $.Release.Name }}-{{ $.Values.website.service.name }}
             servicePort: {{ $.Values.website.service.port }}
+  {{- end }}
 {{- if .tls }}
   tls:
   - hosts:
+    {{- range .Values.ingress.hosts }}
     - {{ .name }}
-    secretName: {{ .tlsSecret }}
+    {{- end }}
+    secretName: {{ .Values.ingress.tlsSecret }}
 {{- end }}
 ---
-{{- end }}
 {{- end }}

charts/molgenis-website/templates/service.yaml

@@ -1,7 +1,7 @@
 apiVersion: v1
 kind: Service
 metadata:
-  name: {{ .Values.website.service.name }}
+  name: {{ .Release.Name }}-{{ .Values.website.service.name }}
   labels:
     app: {{ .Values.website.service.name }}
     release: {{ .Release.Name }}

charts/molgenis-website/values.yaml

@@ -14,7 +14,7 @@ website:
   image:
     repository: registry.molgenis.org
     name: molgenis/website
-    tag: stable
+    tag: latest
     pullPolicy: Always
   service:
     name: molgenis-website

charts/opal/README.md

@@ -1,13 +0,0 @@
-# Opal
-This chart is used for acceptance and production use cases.
-
-## Containers
-The created containers are:
-
-- Opal
-- MongoDB
-- RServer
-
-## Provisioning
-You can choose from which registry you want to pull. There is 1 one registry:
-- https://hub.docker.com

charts/opal/questions.yml

@@ -1,35 +0,0 @@
-
-categories:
-- OPAL
-questions:
-- variable: opal.environment
-  label: Environment
-  default: "test"
-  description: "Environment of Opal instance"
-  type: enum
-  options:
-   - development
-   - test
-   - acceptance
-   - production
-  required: true
-  group: "Provisioning"
-- variable: molgenis.type.kind
-  label: Type
-  default: "medium"
-  description: "Type of MOLGENIS resources"
-  type: enum
-  options:
-   - small
-   - medium
-   - large
-  required: true
-  group: "Provisioning"
-- variable: molgenis.image.tag
-  label: Version
-  default: "stable"
-  description: "Select a MOLGENIS version (check the registry.molgenis.org or hub.docker.com for released tags)"
-  type: string
-  required: true
-  group: "Provisioning"
-

charts/opal/requirements.lock

@@ -1,6 +0,0 @@
-dependencies:
-- name: mysql
-  repository: https://kubernetes-charts.storage.googleapis.com/
-  version: 0.10.2
-digest: sha256:77710fe100fb005d51e006d2e19643f9af2b1aadd1c2249c67ffc5be6a095f30
-generated: 2018-11-06T15:57:20.530933765Z

charts/opal/requirements.yaml

@@ -1,4 +0,0 @@
-dependencies:
-  - name: mysql
-    version: ^0.10.2
-    repository: https://kubernetes-charts.storage.googleapis.com/

charts/opal/templates/NOTES.txt

@@ -1,19 +0,0 @@
-1. Get the application URL by running these commands:
-{{- if .Values.ingress.enabled }}
-{{- range .Values.ingress.hosts }}
-  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ . }}{{ $.Values.ingress.path }}
-{{- end }}
-{{- else if contains "NodePort" .Values.service.type }}
-  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ template "molgenis.fullname" . }})
-  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
-  echo http://$NODE_IP:$NODE_PORT
-{{- else if contains "LoadBalancer" .Values.service.type }}
-     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
-           You can watch the status of by running 'kubectl get svc -w {{ template "molgenis.fullname" . }}'
-  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ template "molgenis.fullname" . }} -o jsonpath='{.status.loadBalancer.ingress[0].ip}')
-  echo http://$SERVICE_IP:{{ .Values.service.port }}
-{{- else if contains "ClusterIP" .Values.service.type }}
-  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app={{ template "molgenis.name" . }},release={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
-  echo "Visit http://127.0.0.1:8080 to use your application"
-  kubectl port-forward $POD_NAME 8080:80
-{{- end }}

charts/opal/templates/_helpers.tpl

@@ -1,32 +0,0 @@
-{{/* vim: set filetype=mustache: */}}
-{{/*
-Expand the name of the chart.
-*/}}
-{{- define "opal.name" -}}
-{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-
-{{/*
-Create a default fully qualified app name.
-We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
-If release name contains chart name it will be used as a full name.
-*/}}
-{{- define "opal.fullname" -}}
-{{- if .Values.fullnameOverride -}}
-{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- $name := default .Chart.Name .Values.nameOverride -}}
-{{- if contains $name .Release.Name -}}
-{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-{{- end -}}
-{{- end -}}
-
-{{/*
-Create chart name and version as used by the chart label.
-*/}}
-{{- define "opal.chart" -}}
-{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
-{{- end -}}

charts/opal/templates/deployment.yaml

@@ -1,83 +0,0 @@
-apiVersion: apps/v1beta2
-kind: Deployment
-metadata:
-  {{- with .Values.ingress.annotations }}
-  annotations:
-{{ toYaml . | indent 4 }}
-  {{- end }}
-  name: {{ template "opal.fullname" . }}
-  labels:
-    app: {{ template "opal.name" . }}
-    chart: {{ template "opal.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  replicas: {{ .Values.replicaCount }}
-  selector:
-    matchLabels:
-      app: {{ template "opal.name" . }}
-      release: {{ .Release.Name }}
-  strategy:
-    type: Recreate
-  template:
-    metadata:
-      labels:
-        app: {{ template "opal.name" . }}
-        release: {{ .Release.Name }}
-    spec:
-      containers:
-        - name: opal
-        {{- with .Values.opal }}
-          image: {{ .image.repository }}/{{ .image.name }}:{{ .image.tag }}
-          imagePullPolicy: {{ .image.pullPolicy }}
-          env:
-            - name: OPAL_ADMINISTRATOR_PASSWORD
-              value: "{{ .adminPassword }}"
-          ports:
-            - containerPort: {{ $.Values.service.port }}
-          {{- if $.Values.persistence.enabled }}
-          volumeMounts:
-          - name: opal-nfs
-            mountPath: /home/opal
-          {{- end }}
-          livenessProbe:
-            httpGet:
-              path: /
-              port: {{ $.Values.service.port }}
-            initialDelaySeconds: 60
-            periodSeconds: 5
-            failureThreshold: 25
-            successThreshold: 1
-          resources:
-{{ toYaml .resources | indent 12 }}
-        {{- end }}
-        - name: rserver
-        {{- with .Values.rserver }}
-          image: {{ .image.repository }}/{{ .image.name }}:{{ .image.tag }}
-          imagePullPolicy: {{ .image.pullPolicy }}
-          ports:
-            - containerPort: 6612
-            - containerPort: 6311
-          resources:
-{{ toYaml .resources | indent 12 }}
-        {{- end }}
-
-{{- if .Values.persistence.enabled }}
-      volumes:
-        - name: opal-nfs
-          persistentVolumeClaim:
-            claimName: {{ .Release.Name }}-{{ .Values.opal.persistence.claim }}
-{{- end }}
-
-    {{- with .Values.nodeSelector }}
-      nodeSelector:
-{{ toYaml . | indent 8 }}
-    {{- end }}
-    {{- with .Values.affinity }}
-      affinity:
-{{ toYaml . | indent 8 }}
-    {{- end }}
-    {{- with .Values.tolerations }}
-      tolerations:
-{{ toYaml . | indent 8 }}
-    {{- end }}

charts/opal/templates/ingress.yaml

@@ -1,40 +0,0 @@
-{{- if .Values.ingress.enabled -}}
-{{- $fullName := include "opal.fullname" . -}}
-{{- $ingressPath := .Values.ingress.path -}}
-apiVersion: extensions/v1beta1
-kind: Ingress
-metadata:
-  name: "{{ $.Release.Name }}-ingress"
-  labels:
-    app: {{ $.Values.service.name }}
-    chart: "{{ $.Chart.Name }}-{{ $.Chart.Version }}"
-    release: "{{ .Release.Name }}"
-    heritage: "{{ .Release.Service }}"
-{{- with .Values.ingress.annotations }}
-  annotations:
-{{ toYaml . | indent 4 }}
-{{- end }}
-spec:
-{{- if .Values.ingress.tls }}
-  tls:
-  {{- range .Values.ingress.tls }}
-    - hosts:
-      {{- range .hosts }}
-        - {{ . }}
-      {{- end }}
-      secretName: {{ .secretName }}
-  {{- end }}
-{{- end }}
-  rules:
-  {{- if .Values.ingress.hosts }}
-  {{- range $host := .Values.ingress.hosts }}
-    - host: {{ $host }}
-      http:
-        paths:
-          - path: {{ $ingressPath }}
-            backend:
-              serviceName: "{{ $.Release.Name }}-{{ $.Values.service.name }}"
-              servicePort: {{ $.Values.service.port }}
-  {{- end }}
-  {{- end }}
-{{- end }}

charts/opal/templates/opal-pvc.yaml

@@ -1,19 +0,0 @@
-{{- if .Values.persistence.enabled -}}
-apiVersion: extensions/v1beta1
-kind: PersistentVolumeClaim
-apiVersion: v1
-metadata:
-  name: {{ .Release.Name }}-{{ .Values.opal.persistence.claim }}
-  annotations:
-    {{- if .Values.persistence.retain }}
-    volume.beta.kubernetes.io/storage-class: "nfs-provisioner-retain"
-    {{- else }}
-    volume.beta.kubernetes.io/storage-class: "nfs-provisioner"
-    {{- end }}
-spec:
-  accessModes:
-    - ReadWriteMany
-  resources:
-    requests:
-      storage: {{ .Values.opal.persistence.size }}
-{{- end }}

charts/opal/templates/service.yaml

@@ -1,17 +0,0 @@
-apiVersion: v1
-kind: Service
-metadata:
-  name: "{{ .Release.Name }}-{{ .Values.service.name }}"
-  labels:
-    app: "{{ .Release.Name }}-{{ .Values.service.name }}"
-    chart: {{ template "opal.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  type: {{ .Values.service.type }}
-  ports:
-    - name: "{{ .Release.Name }}-{{ .Values.service.name }}"
-      port: {{ .Values.service.port }}
-  selector:
-    app: {{ template "opal.name" . }}
-    release: {{ .Release.Name }}

charts/opal/values.yaml

@@ -1,84 +0,0 @@
-# Default values for molgenis.
-
-replicaCount: 1
-
-service:
-  name: opal
-  type: ClusterIP
-  port: 8080
-
-ingress:
-  enabled: true
-  annotations:
-    nginx.ingress.kubernetes.io/proxy-body-size: "0"
-  hosts:
-    - opal.dev.molgenis.org
-  path: /
-  tls: []
-
-opal:
-  advanced: false
-  javaOpts:
-    maxHeapSpace: "4g"
-  resources:
-    limits:
-    cpu: 1
-    memory: 2Gi
-  requests:
-    cpu: 200m
-    memory: 4Gi
-  persistence:
-    size: 10Gi
-  image:
-    repository: registry.hub.docker.com
-    name: obiba/opal
-    tag: latest
-    pullPolicy: Always
-  adminPassword: ?01LifeCycle!
-  persistence:
-    claim: pvc-opal
-    size: 10Gi
-  containerPorts:
-    - 8080
-
-rserver:
-  image:
-    repository: registry.hub.docker.com
-    name: obiba/opal-rserver
-    tag: latest
-    pullPolicy: IfNotPresent
-  resources:
-    limits:
-      cpu: 1
-      memory: 2Gi
-  containerPorts:
-   - 6612
-   - 6311
-
-mysql:
-  persistence:
-    enabled: false
-  mysqlRootPassword: ParaD0xa
-  mysqlUser: opal
-  mysqlPassword: ?opal01!
-  initializationFiles:
-    opal-ids.sql: |-
-      CREATE DATABASE IF NOT EXISTS opal_ids DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
-      GRANT ALL PRIVILEGES ON opal_ids.* TO "opal"@"%" IDENTIFIED BY "?opal01!";
-      FLUSH PRIVILEGES;
-    opal-data.sql: |-
-      CREATE DATABASE IF NOT EXISTS opal_data DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
-      GRANT ALL PRIVILEGES ON opal_data.* TO "opal"@"%" IDENTIFIED BY "?opal01!";
-      FLUSH PRIVILEGES;
-
-persistence:
-  enabled: false
-  retain: false
-
-nodeSelector: {
-  deployPod: "true"
-}
-
-tolerations: []
-
-affinity: {}

charts/rstudio/Chart.yaml

@@ -1,12 +0,0 @@
-apiVersion: v1
-appVersion: "1.0"
-description: RStudio stack
-name: rstudio
-version: 0.0.1
-sources:
-- https://git.webhosting.rug.nl/molgenis/thirdparty-ops-docker-helm.git
-icon: https://raw.git.webhosting.rug.nl/molgenis/thirdparty-ops-docker-helm/master/charts/rstudio/catalog-molgenis-rstudio.svg
-home: https://www.rocker.org
-maintainers:
-- name: sidohaakma
-- name: fdlk

charts/rstudio/README.md

@@ -1,37 +0,0 @@
-# MOLGENIS - RStudio Helm Chart
-
-An RStudio instance to support DataSHIELD users in setting up a central analysis server instance.
-
-## Containers
-
-This chart will deploy the following container:
-
-- molgenis-rstudio (with DataSHIELD packages)
-
-## Provisioning
-You can choose for the RStudio image from which repository you want to pull. Experimental builds are pushed to registry.molgenis.org and the stable builds to hub.docker.com. 
-You need to fill out 2 properties to determine which repository you are going to use.
-
-- ```rstudio.image.repository```
-- ```rstudio.image.tag```
-
-You can do this in the questions in Rancher or in the ```values.yaml```.
-
-## Development
-You can test in install the chart by executing:
-
-```helm lint .```
-
-To test if your helm chart-syntax is right and:
-
-```helm install . --dry-run --debug```
-
-To test if your hem chart works and:
-
-```helm install .```
-
-To deploy it on the cluster.
-
-```curl -L -u xxxx:xxxx http://registry.molgenis.org/repository/helm/ --upload-file molgenis-x.x.x.tgz```
-
-To push it to the registry

charts/rstudio/questions.yml

@@ -1,31 +0,0 @@
-
-categories:
-- MOLGENIS
-questions:
-- variable: rstudio.environment
-  label: Environment
-  default: development
-  type: enum
-  options:
-  - development
-  - test
-  - acceptence
-  - production
-  group: "Provisioning"
-- variable: rstudio.image.repository
-  label: Registry
-  default: "registry.hub.docker.com"
-  description: "Select a registry to pull from"
-  type: enum
-  options:
-  - "registry.hub.docker.com"
-  - "registry.molgenis.org"
-  required: true
-  group: "Provisioning"
-- variable: rstudio.image.tag
-  label: Version
-  default: ""
-  description: "Select a RStudio version (check the registry.molgenis.org or hub.docker.com for released tags)"
-  type: string
-  required: true
-  group: "Provisioning"

charts/rstudio/templates/_helpers.tpl

@@ -1,32 +0,0 @@
-{{/* vim: set filetype=mustache: */}}
-{{/*
-Expand the name of the chart.
-*/}}
-{{- define "rstudio.name" -}}
-{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-
-{{/*
-Create a default fully qualified app name.
-We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
-If release name contains chart name it will be used as a full name.
-*/}}
-{{- define "rstudio.fullname" -}}
-{{- if .Values.fullnameOverride -}}
-{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- $name := default .Chart.Name .Values.nameOverride -}}
-{{- if contains $name .Release.Name -}}
-{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-{{- end -}}
-{{- end -}}
-
-{{/*
-Create chart name and version as used by the chart label.
-*/}}
-{{- define "rstudio.chart" -}}
-{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
-{{- end -}}

charts/rstudio/templates/deployment.yaml

@@ -1,46 +0,0 @@
-apiVersion: extensions/v1beta1
-kind: Deployment
-metadata:
-  {{- with .Values.ingress.annotations }}
-  annotations:
-{{ toYaml . | indent 4 }}
-  {{- end }}
-  name: {{ template "rstudio.fullname" . }}
-  labels:
-    app: {{ template "rstudio.name" . }}
-    chart: {{ template "rstudio.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  replicas: {{ .Values.replicaCount }}
-  selector:
-    matchLabels:
-      app: {{ template "rstudio.name" . }}
-      release: {{ .Release.Name }}
-  template:
-    metadata:
-      labels:
-        app: {{ template "rstudio.name" . }}
-        release: {{ .Release.Name }}
-    spec:
-      containers:
-      {{- with .Values.rstudio }}
-      - name: {{ .name }}
-        image: "{{ .image.repository }}/{{ .image.name }}:{{ .image.tag }}"
-        imagePullPolicy: {{ .image.pullPolicy }}
-        env:
-        - name: PASSWORD
-          value: "{{ .adminPassword }}"
-        ports:
-        - containerPort: {{ .service.port }}
-        livenessProbe:
-          httpGet:
-            path: /
-            port: {{ .service.port }}
-          initialDelaySeconds: 60
-          periodSeconds: 5
-          failureThreshold: 25
-          successThreshold: 1
-      {{- end }}
-
-

charts/rstudio/templates/ingress.yaml

@@ -1,36 +0,0 @@
-{{- if .Values.ingress.enabled }}
-{{- range .Values.ingress.hosts }}
-apiVersion: extensions/v1beta1
-kind: Ingress
-metadata:
-  name: "{{ $.Release.Name }}-ingress"
-  labels:
-    app:  "{{ .Release.Name}}-{{ .Values.rstudio.service.name }}"
-    chart: "{{ $.Chart.Name }}-{{ $.Chart.Version }}"
-    release: "{{ $.Release.Name }}"
-    heritage: "{{ $.Release.Service }}"
-  annotations:
-    {{- if .tls }}
-    ingress.kubernetes.io/secure-backends: "true"
-    {{- end }}
-    {{- range $key, $value := .annotations }}
-    {{ $key }}: {{ $value | quote }}
-    {{- end }}
-spec:
-  rules:
-  - host: {{ .name }}
-    http:
-      paths:
-        - path: {{ default "/" .path }}
-          backend:
-            serviceName: "{{ .Release.Name}}-{{ .Values.rstudio.service.name }}"
-            servicePort: {{ $.Values.rstudio.service.port }}
-{{- if .tls }}
-  tls:
-  - hosts:
-    - {{ .name }}
-    secretName: {{ .tlsSecret }}
-{{- end }}
----
-{{- end }}
-{{- end }}

charts/rstudio/templates/service.yaml

@@ -1,16 +0,0 @@
-apiVersion: v1
-kind: Service
-metadata:
-  name: "{{ .Release.Name}}-{{ .Values.rstudio.service.name }}"
-  labels:
-    app: "{{ .Release.Name}}-{{ .Values.rstudio.service.name }}"
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  type: {{ .Values.rstudio.service.type }}
-  ports:
-    - name: "{{ .Release.Name}}-{{ .Values.rstudio.service.name }}"
-      port: {{ .Values.rstudio.service.port }}
-  selector:
-    app: {{ template "rstudio.name" . }}
-    release: {{ .Release.Name }}

charts/rstudio/values.yaml

@@ -1,40 +0,0 @@
-# Default values for nexus.
-# This is a YAML-formatted file.
-# Declare variables to be passed into your templates.
-
-replicaCount: 1
-
-environment: production
-
-rstudio:
-  name: rstudio
-  strategy:
-    type: Recreate
-  restartPolicy: Always
-  adminPassword: ?01LifeCycle!
-  image:
-    repository: registry.hub.docker.com
-    name: molgenis/rstudio
-    tag: beta
-    pullPolicy: Always
-  service:
-    name: rstudio
-    type: ClusterIP
-    port: 8787
-
-ingress:
-  enabled: true
-  annotations: {
-    kubernetes.io/ingress.class: "nginx",
-    nginx.ingress.kubernetes.io/proxy-body-size: "0"
-  }
-  path: /
-  hosts:
-  - name: analysis.dev.molgenis.org
-  tls: []
-
-nodeSelector: {}
-
-tolerations: []
-
-affinity: {}

charts/website/.helmignore

@@ -1,21 +0,0 @@
-# Patterns to ignore when building packages.
-# This supports shell glob matching, relative path matching, and
-# negation (prefixed with !). Only one pattern per line.
-.DS_Store
-# Common VCS dirs
-.git/
-.gitignore
-.bzr/
-.bzrignore
-.hg/
-.hgignore
-.svn/
-# Common backup files
-*.swp
-*.bak
-*.tmp
-*~
-# Various IDEs
-.project
-.idea/
-*.tmproj

charts/website/Chart.yaml

@@ -1,12 +0,0 @@
-apiVersion: v1
-appVersion: "1.0"
-description: MOLGENIS Helm chart for OpenCPU
-name: molgenis-website
-version: 0.0.1
-sources:
-- https://github.com/molgenis/molgenis-ops-docker-helm.git
-icon: https://raw.githubusercontent.com/molgenis/molgenis-ops-docker-helm/master/charts/molgenis-website/catalog-molgenis-website.svg
-home: https://www.molgenis.org
-maintainers:
-- name: sidohaakma
-- name: fdlk

charts/website/questions.yml

@@ -1,28 +0,0 @@
-
-categories:
-- MOLGENIS
-questions:
-- variable: ingress.enabled
-  label: Enable ingress
-  default: false
-  description: "Enable ingress"
-  type: boolean
-  required: true
-  group: "Load balancing"
-- variable: opencpu.image.repository
-  label: Registry
-  default: "registry.hub.docker.com"
-  description: "Select a registry to pull from"
-  type: enum
-  options:
-  - "registry.hub.docker.com"
-  - "registry.molgenis.org"
-  required: true
-  group: "Provisioning"
-- variable: opencpu.image.tag
-  label: Version
-  default: ""
-  description: "Select a OpenCPU version (check the registry.molgenis.org or hub.docker.com for released tags)"
-  type: string
-  required: true
-  group: "Provisioning"