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Add 'rnaseq/step5_count/snippet_counts'

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A.K. Saikumar Jayalatha 2021-02-12 15:54:26 +01:00
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commit 96a1e59daf
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## Generate Raw Counts using FeatureCounts/HTSeqCounts
## Load package Subread (packge within which FeatureCounts is present)
+ ml Subread/1.6.4-foss-2015b FeatureCounts
## Features used in FeatureCounts :
## -s : reversely stranded
## -T : number of threads used
## -a : reference genome
## -o : output file
+ featureCounts \
+ --a "path to reference genome" \
+ --T 6 \
+ --o "path to output file" \
+ --s 2