added codes

python_code/input.yaml

@@ -0,0 +1,92 @@
+#################################################
+#
+#   Input file
+#
+#################################################
+
+mesh_file: '../data/slice_Hz5.7.h5'
+#mesh_file: '../data/boxmeshH1.h5'
+dt: 0.030
+VENC: 77
+#VENC: 38
+shape: scalar #only scalar data right now
+
+io: 
+  #path to file to unwrap
+  in_file: '../data/slice5.7/GroundTruth_meas/postprocess/SNR6V60/'
+  #in_file: '../data/aorta_RH3_h1/postprocess/SNR12V60/'
+  #ground_file: '../data/slice5.7/GroundTruth_meas/'
+  #path to folder where to save results
+  #savepath: '../results/aorta_RH3_h1/SNR12V60_60ms/'
+  savepath: '../results/slice5.7/SNR6V60_30ms/'
+  write_checkpoints: False
+  write_xdmf: True
+
+realizations:
+  apply: True
+  seed_init: 100
+  total_number: 50
+  save_all_errors: True 
+
+unwrapping:
+  Temporal:
+    apply: True
+    t_ref: 0
+    path_addon: 'temporal/'
+
+  lap3d:
+    apply: True
+    path_addon: 'lap3d/'
+
+  lap4d:
+    apply: True
+    path_addon: 'lap4d/'
+
+  Probability:
+    apply: True
+    nlow: 10
+    nhigh: 10
+    t_low: 0.32
+    t_high: 0.75
+    w_s: 1.0
+    w_t: 2.5
+    path_addon: 'prob/'
+
+  omme:
+    apply: True
+    apply_to_previous: False
+    #high_venc: 160
+    high_venc: 126
+    #mid_venc: 77
+    mid_venc: 38
+    #low_venc: 38
+    highvenc_file: '../data/slice5.7/GroundTruth_meas/'
+    #highvenc_file: '../data/aorta_RH3_h1/GroundTruth/'
+    midvenc_file: '../data/slice5.7/GroundTruth_meas/postprocess/SNR6V60/'
+    #midvenc_file: '../data/aorta_RH3_h1/postprocess/SNR12V60/'
+    #lowvenc_file: '../data/aorta_RH3_h3/postprocess/SNR12V30/'
+    path_addon: 'omme/'
+
+  lee:
+    apply: False
+    apply_to_previous: False
+    #highvenc_file: '../data/aorta_RH3_h3/GroundTruth/'
+    highvenc_file: '../data/slice5.7/GroundTruth_meas/'
+    #lowvenc_file: '../data/aorta_RH3_h3/postprocess/SNR15V60/'
+    lowvenc_file: '../data/slice5.7/GroundTruth_meas/postprocess/SNR12V60_s100/'
+    path_addon: 'lee/'
+
+eval:
+  apply: True
+  eval_omme: False
+  #ground_file: '../data/aorta_RH3_h1/GroundTruth/'
+  ground_file: '../data/slice5.7/GroundTruth_meas/'
+  method: 'error'
+  lumen: True
+  save_errors: True
+
+mesh:
+  mesh_type: slice
+  dxs: [0.25, 0.25, 0.25]
+
+