Pulling from system_genetic to my repository #1

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T. Karp merged 18 commits from GRIAC/system_genetics:master into master

2021-02-23 15:08:29 +01:00

T. Karp commented

2021-02-23 15:07:31 +01:00

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T. Karp added 18 commits 2021-02-23 15:07:34 +01:00

3d7c9e3b1c FastQC, Trimming, Overall QC (initial)

58bd93171c Test change

135f231c86 Remove whitespace, MacOS specific files.

648cd09a0e fastqc: simple comment. trimming: reverted back. overall qc: simplified the scripts and made sure to add instructions.

1037d154e3 Small snippet that generates a genome index and aligns the RNAseq reads.

4b61c099f6 Update 'rnaseq/step2_trim/snippet.sh'

170a001729 Count reads in X and Y chromosome.

4c52527340 Merge branch 'master' into master

e2206cbc39 Merge pull request 'FastQC, Trimming, Overall QC (initial)' (#1 ) from P300299/system_genetics:master into master

Reviewed-on: GRIAC/system_genetics#1

51abdcdb26 Trimmomatic update (simplified)

6cf40804c4 adapter comments

cba83716c8 Merge pull request 'Trimmomatic update (simplified)' (#5 ) from P300299/system_genetics:master into master

Reviewed-on: GRIAC/system_genetics#5

65d7193848 Merge branch 'master' into step3/star-alignment-snippet

59f1b425b1 Merge pull request 'Small snippet that generates a genome index and aligns the RNAseq reads.' (#2 ) from step3/star-alignment-snippet into master

Reviewed-on: GRIAC/system_genetics#2

981a983dd5 Merge pull request 'UMI deduplication script from Victor' (#3 ) from s3970582/system_genetics:master into master

Reviewed-on: GRIAC/system_genetics#3

a2bc313515 Simple snippet on running MultiQC to collate FastQC results

f93596dd87 Made snippet input- and output files more harmonised.

55658e204f Merge pull request 'Made snippet input- and output files more harmonised.' (#6 ) from feature/harmonised-steps into master

Reviewed-on: GRIAC/system_genetics#6

T. Karp merged commit f58dfdaad6 into master

2021-02-23 15:08:29 +01:00

T. Karp referenced this issue from a commit

2021-02-23 15:08:30 +01:00

Merge pull request 'FastQC, Trimming, Overall QC (initial)' (#1) from P300299/system_genetics:master into master

T. Karp referenced this issue from a commit

2021-02-23 15:08:30 +01:00

Merge pull request 'Pulling from system_genetic to my repository' (#1) from GRIAC/system_genetics:master into master

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Reference: s3970582/system_genetics#1

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