Pulling from system_genetic to my repository #1

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T. Karp merged 18 commits from GRIAC/system_genetics:master into master 2021-02-23 15:08:29 +01:00

Conversation 0 Commits 18 Files Changed 9 +361

T. Karp commented 2021-02-23 15:07:31 +01:00

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T. Karp added 18 commits 2021-02-23 15:07:34 +01:00

FastQC, Trimming, Overall QC (initial) 3d7c9e3b1c

Test change 58bd93171c

Remove whitespace, MacOS specific files. 135f231c86

fastqc: simple comment. trimming: reverted back. overall qc: simplified the scripts and made sure to add instructions. 648cd09a0e

Small snippet that generates a genome index and aligns the RNAseq reads. 1037d154e3

Update 'rnaseq/step2_trim/snippet.sh' 4b61c099f6

Count reads in X and Y chromosome. 170a001729

Merge branch 'master' into master 4c52527340

Merge pull request 'FastQC, Trimming, Overall QC (initial)' (#1) from P300299/system_genetics:master into master ... e2206cbc39

Reviewed-on: GRIAC/system_genetics#1

Trimmomatic update (simplified) 51abdcdb26

adapter comments 6cf40804c4

Merge pull request 'Trimmomatic update (simplified)' (#5) from P300299/system_genetics:master into master ... cba83716c8

Reviewed-on: GRIAC/system_genetics#5

Merge branch 'master' into step3/star-alignment-snippet 65d7193848

Merge pull request 'Small snippet that generates a genome index and aligns the RNAseq reads.' (#2) from step3/star-alignment-snippet into master ... 59f1b425b1

Reviewed-on: GRIAC/system_genetics#2

Merge pull request 'UMI deduplication script from Victor' (#3) from s3970582/system_genetics:master into master ... 981a983dd5

Reviewed-on: GRIAC/system_genetics#3

Simple snippet on running MultiQC to collate FastQC results a2bc313515

Made snippet input- and output files more harmonised. f93596dd87

Merge pull request 'Made snippet input- and output files more harmonised.' (#6) from feature/harmonised-steps into master ... 55658e204f

Reviewed-on: GRIAC/system_genetics#6

T. Karp merged commit f58dfdaad6 into master 2021-02-23 15:08:29 +01:00

T. Karp referenced this issue from a commit 2021-02-23 15:08:30 +01:00

Merge pull request 'FastQC, Trimming, Overall QC (initial)' (#1) from P300299/system_genetics:master into master

T. Karp referenced this issue from a commit 2021-02-23 15:08:30 +01:00

Merge pull request 'Pulling from system_genetic to my repository' (#1) from GRIAC/system_genetics:master into master

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Reference: s3970582/system_genetics#1

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