radar2/grouping microorganisms.csv

1	name	pathogen_group
2	Coagulase-negative Staphylococcus (CoNS)	2
3	Escherichia coli	1
4	Staphylococcus aureus	1
5	Enterococcus faecium	1
6	Klebsiella pneumoniae	1
7	Enterococcus faecalis	1
8	Pseudomonas aeruginosa	1
9	Streptococcus pneumoniae	1
10	Streptococcus mitis	1
11	Enterobacter cloacae	1
12	Micrococcus luteus	2
13	Milleri Group Streptococcus (MGS)	1
14	Klebsiella oxytoca	1
15	Bacteroides fragilis	1
16	Serratia marcescens	1
17	Klebsiella variicola	1
18	Streptococcus agalactiae	1
19	Streptococcus dysgalactiae	1
20	Proteus mirabilis	1
21	Candida glabrata	1
22	Cutibacterium acnes	2
23	Candida albicans	1
24	Streptococcus salivarius	2
25	Bacillus	3
26	Haemophilus influenzae	1
27	Streptococcus parasanguinis	1
28	Aerococcus urinae	1
29	Enterococcus casseliflavus	1
30	Streptococcus pyogenes	1
31	Citrobacter freundii	1
32	Listeria monocytogenes	1
33	Parvimonas micra	1
34	Rothia mucilaginosa	2
35	Bacillus cereus	3
36	Bacteroides thetaiotaomicron	1
37	Corynebacterium jeikeium	3
38	Citrobacter koseri	1
39	Gemella morbillorum	1
40	(unknown Gram-positives)	3
41	Salmonella	1
42	Salmonella enterica	1
43	Veillonella	1
44	Fusobacterium nucleatum	1
45	Hafnia alvei	1
46	Rothia dentocariosa	2
47	Schaalia odontolytica	2
48	Stenotrophomonas maltophilia	1
49	Streptococcus lutetiensis	1
50	Acinetobacter	1
51	Acinetobacter lwoffii	1
52	Aeromonas	1
53	Alistipes onderdonkii	1
54	Actinomyces oris	1
55	Anaerococcus octavius	1
56	Bacillus licheniformis	3
57	Bacteroides ovatus	1
58	Bacteroides vulgatus	1
59	Brevibacterium	3
60	Corynebacterium	3
61	Eggerthella lenta	1
62	Enterococcus avium	1
63	Granulicatella adiacens	1
64	Klebsiella aerogenes	1
65	Lactobacillus gasseri	1
66	Lactobacillus rhamnosus	1
67	Morganella morganii	1
68	Abiotrophia defectiva	1
69	Achromatium	3
70	Actinobaculum	2
71	Aeromonas hydrophila	1
72	Alloscardovia omnicolens	2
73	Aliivibrio finisterrensis	2
74	Actinomyces dentalis	2
75	Anaerococcus	1
76	Anaerococcus vaginalis	1
77	Bacillus pumilus	3
78	Bacteroides uniformis	1
79	Bifidobacterium longum	2
80	Butyrivibrio	2
81	Cellulosimicrobium cellulans	2
82	Campylobacter ureolyticus	1
83	Capnocytophaga sputigena	1
84	Corynebacterium afermentans	3
85	Corynebacterium amycolatum	3
86	Corynebacterium aurimucosum	3
87	Corynebacterium mucifaciens	3
88	Corynebacterium minutissimum	3
89	Corynebacterium tuberculostearicum	3
90	Corynebacterium urealyticum	3
91	Cutibacterium avidum	2
92	Eubacterium limosum	3
93	Eikenella corrodens	1
94	Enterobacillus	2
95	(unknown Gram-negatives)	2
96	Helcococcus kunzii	1
97	Kocuria	1
98	Kocuria rhizophila	1
99	Lachnoanaerobaculum orale	3
100	Lactobacillus fermentum	2
101	Lactobacillus plantarum	2
102	Lactobacillus paracasei	2
103	Lancefieldella parvula	2
104	Micrococcus	2
105	Moraxella atlantae	1
106	Moraxella catarrhalis	1
107	Moraxella osloensis	1
108	Neisseria	2
109	Neisseria subflava	2
110	Odoribacter splanchnicus	1
111	Pantoea agglomerans	2
112	Pediococcus pentosaceus	1
113	Paenibacillus	1
114	Paenibacillus illinoisensis	1
115	Parabacteroides distasonis	1
116	Providencia rettgeri	1
117	Prevotella melaninogenica	1
118	Pseudomonas putida	1
119	Rhodococcus hoagii	1
120	Schaalia meyeri	1
121	Schaalia turicensis	1
122	Solobacterium moorei	2
123	Staphylococcus	2
124	Streptococcus equinus	1
125	Streptococcus gallolyticus	1
126	Streptococcus salivarius thermophilus	2
127	Veillonella atypica	1
128	Weissella	1
129	Candida dubliniensis	1
130	Candida nivariensis	1
131	Candida parapsilosis	1
132	Issatchenkia orientalis	1
133	Kluyveromyces marxianus	2
134	Meyerozyma guilliermondii	1