H.C. Donker

H.C. Donker created pull request GRIAC/system_genetics#6

2021-02-22 13:20:23 +01:00

Made snippet input- and output files more harmonised.

H.C. Donker pushed to feature/harmonised-steps at GRIAC/system_genetics

2021-02-22 13:18:29 +01:00

160a673d5f Made snippet input- and output files more harmonised.

H.C. Donker pushed to step3/star-alignment-snippet at GRIAC/system_genetics

2021-02-12 14:46:29 +01:00

1037d154e3 Small snippet that generates a genome index and aligns the RNAseq reads.

d71460a7dd Tailored storage locations to calculon.

ef4a25f54b Small snippet that generates a genome index and aligns the RNAseq reads.

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H.C. Donker deleted branch step2/code-snippet from GRIAC/system_genetics

2021-02-12 13:24:51 +01:00

H.C. Donker pushed to step2/code-snippet at GRIAC/system_genetics

2021-02-12 13:19:54 +01:00

4c1785702e I made a change to step2.

H.C. Donker pushed to step3/star-alignment-snippet at GRIAC/system_genetics

2021-02-11 10:47:31 +01:00

d71460a7dd Tailored storage locations to calculon.

H.C. Donker created pull request GRIAC/system_genetics#2

2021-02-09 17:36:22 +01:00

Small snippet that generates a genome index and aligns the RNAseq reads.

H.C. Donker pushed to step3/star-alignment-snippet at GRIAC/system_genetics

2021-02-09 17:31:52 +01:00

ef4a25f54b Small snippet that generates a genome index and aligns the RNAseq reads.

H.C. Donker commented on pull request GRIAC/system_genetics#1

2021-02-09 15:51:05 +01:00

FastQC, Trimming, Overall QC (initial)

I though we were going to use trimmomatic?

H.C. Donker commented on pull request GRIAC/system_genetics#1

2021-02-09 15:51:05 +01:00

FastQC, Trimming, Overall QC (initial)

Does this depend on sequencing machine/library type? If so, specify.

H.C. Donker commented on pull request GRIAC/system_genetics#1

2021-02-09 15:51:05 +01:00

FastQC, Trimming, Overall QC (initial)

Perhaps write some instructions how to use. E.g., you need samples.csv.

H.C. Donker commented on pull request GRIAC/system_genetics#1

2021-02-09 15:51:05 +01:00

FastQC, Trimming, Overall QC (initial)

Maybe a general question, do we want to:

H.C. Donker suggested changes for GRIAC/system_genetics#1

2021-02-09 15:51:05 +01:00

FastQC, Trimming, Overall QC (initial)

H.C. Donker commented on pull request GRIAC/system_genetics#1

2021-02-09 15:06:15 +01:00

FastQC, Trimming, Overall QC (initial)

See my review comments.

H.C. Donker pushed to master at GRIAC/system_genetics

2021-02-09 11:20:31 +01:00

7ecbc2aee9 Template structure.

H.C. Donker deleted branch feature/drone-pipeline from GRIAC/system_genetics

2019-12-12 18:01:26 +01:00

H.C. Donker pushed to master at GRIAC/system_genetics

2019-12-12 18:00:29 +01:00

0dcd6ac858 Merge branch 'feature/drone-pipeline'

d28fafef27 Another try of drone

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H.C. Donker pushed to feature/drone-pipeline at GRIAC/system_genetics

2019-12-12 17:57:31 +01:00

1969069b07 Enhanced but now hopefully working.

H.C. Donker pushed to feature/drone-pipeline at GRIAC/system_genetics

2019-12-12 17:54:21 +01:00

7537778995 Enhanced readibility.

H.C. Donker pushed to feature/drone-pipeline at GRIAC/system_genetics

2019-12-12 17:50:30 +01:00

9b64bb65fa Another yaml test.