H.C. Donker

H.C. Donker created branch master in GRIAC/reproducible-scripts

2022-02-17 11:51:02 +01:00

H.C. Donker pushed to master at GRIAC/reproducible-scripts

2022-02-17 11:51:02 +01:00

635b784fba Added example snippets of the presentation.

H.C. Donker created repository GRIAC/reproducible-scripts

2022-02-17 10:02:35 +01:00

H.C. Donker pushed to master at GRIAC/system_genetics

2021-03-17 17:06:18 +01:00

35f356dd33 Use BAM files for htseq-count.

H.C. Donker pushed to master at GRIAC/system_genetics

2021-03-10 13:45:12 +01:00

4b449ded08 Bug fix in trimmomatic paired-end flag.

H.C. Donker pushed to master at GRIAC/system_genetics

2021-02-25 17:00:06 +01:00

1c42a61e48 Updated htseq-count with extra comments.

H.C. Donker pushed to master at GRIAC/system_genetics

2021-02-25 12:40:22 +01:00

e852072235 Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index.

H.C. Donker commented on pull request GRIAC/system_genetics#7

2021-02-23 12:21:30 +01:00

WIP: added general files descriptions

Is this case sensitive?

H.C. Donker commented on pull request GRIAC/system_genetics#7

2021-02-23 12:21:30 +01:00

WIP: added general files descriptions

Remove anything that refers to your project dir/ you as a user in specific, and keep it general.

H.C. Donker commented on pull request GRIAC/system_genetics#7

2021-02-23 12:21:30 +01:00

WIP: added general files descriptions

Remove comments that are not necessary, or add comments what it can be used for.

H.C. Donker commented on pull request GRIAC/system_genetics#7

2021-02-23 12:21:30 +01:00

WIP: added general files descriptions

Remove all the slurm comments.

H.C. Donker commented on pull request GRIAC/system_genetics#7

2021-02-23 12:21:30 +01:00

WIP: added general files descriptions

Do you really need BioPerl as well?

H.C. Donker suggested changes for GRIAC/system_genetics#7

2021-02-23 12:21:30 +01:00

WIP: added general files descriptions

Requires major revision.

H.C. Donker commented on pull request GRIAC/system_genetics#7

2021-02-23 12:21:30 +01:00

WIP: added general files descriptions

What do you mean with provider?

H.C. Donker deleted branch feature/harmonised-steps from GRIAC/system_genetics

2021-02-23 09:18:01 +01:00

H.C. Donker merged pull request GRIAC/system_genetics#6

2021-02-23 09:17:17 +01:00

Made snippet input- and output files more harmonised.

H.C. Donker pushed to master at GRIAC/system_genetics

2021-02-23 09:17:17 +01:00

55658e204f Merge pull request 'Made snippet input- and output files more harmonised.' (#6) from feature/harmonised-steps into master

f93596dd87 Made snippet input- and output files more harmonised.

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H.C. Donker pushed to feature/harmonised-steps at GRIAC/system_genetics

2021-02-23 09:16:49 +01:00

f93596dd87 Made snippet input- and output files more harmonised.

8a09d00a51 Made snippet input- and output files more harmonised.

a2bc313515 Simple snippet on running MultiQC to collate FastQC results

Compare 3 commits »

H.C. Donker pushed to feature/harmonised-steps at GRIAC/system_genetics

2021-02-23 09:14:11 +01:00

8a09d00a51 Made snippet input- and output files more harmonised.

160a673d5f Made snippet input- and output files more harmonised.

Compare 2 commits »

H.C. Donker commented on pull request GRIAC/system_genetics#7

2021-02-22 16:07:10 +01:00

WIP: added general files descriptions

Did you accidently push your personal code to the wrong repo, or is it on purpose?