AMR/R/globals.R

75 lines
2.8 KiB
R
Raw Normal View History

2018-02-21 11:52:31 +01:00
# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# AUTHORS #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# LICENCE #
# This program is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0, #
# as published by the Free Software Foundation. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# ==================================================================== #
2018-09-01 21:19:46 +02:00
globalVariables(c(".",
2018-09-24 23:33:29 +02:00
"..property",
2018-09-01 21:19:46 +02:00
"antibiotic",
"Antibiotic",
"antibiotics",
2018-09-24 23:33:29 +02:00
"authors",
2018-10-01 11:39:43 +02:00
"Becker",
2018-09-01 21:19:46 +02:00
"cnt",
"count",
2018-10-01 11:39:43 +02:00
"count.x",
"count.y",
2018-09-01 21:19:46 +02:00
"cum_count",
"cum_percent",
"date_lab",
"days_diff",
2018-10-01 14:44:40 +02:00
"diff.percent",
2018-09-01 21:19:46 +02:00
"fctlvl",
"first_isolate_row_index",
"Freq",
2018-09-24 23:33:29 +02:00
"fullname",
2018-09-01 21:19:46 +02:00
"genus",
"gramstain",
"Interpretation",
"item",
"key_ab",
"key_ab_lag",
"key_ab_other",
2018-10-01 11:39:43 +02:00
"Lancefield",
2018-09-16 22:11:17 +02:00
"lbl",
2018-09-01 21:19:46 +02:00
"median",
"mic",
"microorganisms",
2018-09-24 23:33:29 +02:00
"microorganisms.old",
2018-09-01 21:19:46 +02:00
"mo",
2018-09-24 23:33:29 +02:00
"mo.old",
2018-09-01 21:19:46 +02:00
"n",
2018-09-24 23:33:29 +02:00
"name",
2018-09-01 21:19:46 +02:00
"observations",
"other_pat_or_mo",
"Pasted",
"patient_id",
"prevalence",
2018-10-23 14:59:36 +02:00
"psae",
2018-09-01 21:19:46 +02:00
"R",
2018-10-01 14:44:40 +02:00
"ref",
2018-09-01 21:19:46 +02:00
"real_first_isolate",
"S",
"septic_patients",
"shortname",
2018-09-01 21:19:46 +02:00
"species",
2018-09-24 23:33:29 +02:00
"tsn",
"tsn_new",
2018-09-01 21:19:46 +02:00
"value",
2018-09-16 22:11:17 +02:00
"Value",
2018-09-24 23:33:29 +02:00
"y",
"year"))