AMR/DESCRIPTION

Package: AMR
Version: 0.5.0.9009
Date: 2019-01-05
Title: Antimicrobial Resistance Analysis
Authors@R: c(
    person(
        given = c("Matthijs", "S."),
        family = "Berends",
        email = "m.s.berends@umcg.nl",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0001-7620-1800")),
    person(
        given = c("Christian", "F."),
        family = "Luz",
        email = "c.f.luz@umcg.nl",
        role = c("aut", "rev"),
        comment = c(ORCID = "0000-0001-5809-5995")),
    person(
        given = c("Erwin", "E.", "A."),
        family = "Hassing",
        email = "e.hassing@certe.nl",
        role = "ctb"),
    person(
        given = "Corinna",
        family = "Glasner",
        email = "c.glasner@umcg.nl",
        role = c("aut", "ths"),
        comment = c(ORCID = "0000-0003-1241-1328")),
    person(
        given = c("Alex", "W."),
        family = "Friedrich",
        email = "alex.friedrich@umcg.nl",
        role = c("aut", "ths"),
        comment = c(ORCID = "0000-0003-4881-038X")),
    person(
        given = c("Bhanu", "N.", "M."),
        family = "Sinha",
        email = "b.sinha@umcg.nl",
        role = c("aut", "ths"),
        comment = c(ORCID = "0000-0003-1634-0010")))
Description: Functions to simplify the analysis and prediction of Antimicrobial 
    Resistance (AMR) and to work with microbial and antimicrobial properties by
    using evidence-based methods.
Depends:
    R (>= 3.1.0)
Imports:
    backports,
    curl,
    crayon (>= 1.3.0),
    data.table (>= 1.9.0),
    dplyr (>= 0.7.0),
    hms,
    knitr (>= 1.0.0),
    rlang (>= 0.2.0),
    rvest (>= 0.3.2),
    tidyr (>= 0.7.0),
    xml2 (>= 1.0.0)
Suggests:
    covr (>= 3.0.1),
    ggplot2,
    rmarkdown,
    rstudioapi,
    testthat (>= 1.0.2)
VignetteBuilder: knitr
URL: https://msberends.gitlab.io/AMR, https://gitlab.com/msberends/AMR
BugReports: https://gitlab.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
first commit 2018-02-21 11:52:31 +01:00			`Package: AMR`
big website update, licence txt update 2019-01-02 23:24:07 +01:00			`Version: 0.5.0.9009`
language 2019-01-05 21:51:48 +01:00			`Date: 2019-01-05`
First CRAN submission edits 2018-02-22 20:48:48 +01:00			`Title: Antimicrobial Resistance Analysis`
first commit 2018-02-21 11:52:31 +01:00			`Authors@R: c(`
			`person(`
			`given = c("Matthijs", "S."),`
			`family = "Berends",`
			`email = "m.s.berends@umcg.nl",`
AppVeyor 2018-08-13 23:05:53 +02:00			`role = c("aut", "cre"),`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`comment = c(ORCID = "0000-0001-7620-1800")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
			`given = c("Christian", "F."),`
			`family = "Luz",`
			`email = "c.f.luz@umcg.nl",`
AppVeyor 2018-08-13 23:05:53 +02:00			`role = c("aut", "rev"),`
Add ORCID identifier 2018-03-19 10:28:35 +01:00			`comment = c(ORCID = "0000-0001-5809-5995")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
gitlab pages 2018-12-23 21:26:21 +01:00			`given = c("Erwin", "E.", "A."),`
first commit 2018-02-21 11:52:31 +01:00			`family = "Hassing",`
			`email = "e.hassing@certe.nl",`
thesis advisors 2018-08-03 09:59:39 +02:00			`role = "ctb"),`
			`person(`
			`given = "Corinna",`
			`family = "Glasner",`
			`email = "c.glasner@umcg.nl",`
new website, freq updates 2018-12-29 22:24:19 +01:00			`role = c("aut", "ths"),`
thesis advisors 2018-08-03 09:59:39 +02:00			`comment = c(ORCID = "0000-0003-1241-1328")),`
			`person(`
			`given = c("Alex", "W."),`
			`family = "Friedrich",`
			`email = "alex.friedrich@umcg.nl",`
new website, freq updates 2018-12-29 22:24:19 +01:00			`role = c("aut", "ths"),`
thesis advisors 2018-08-03 09:59:39 +02:00			`comment = c(ORCID = "0000-0003-4881-038X")),`
			`person(`
gitlab pages 2018-12-23 21:26:21 +01:00			`given = c("Bhanu", "N.", "M."),`
thesis advisors 2018-08-03 09:59:39 +02:00			`family = "Sinha",`
			`email = "b.sinha@umcg.nl",`
new website, freq updates 2018-12-29 22:24:19 +01:00			`role = c("aut", "ths"),`
abname improvement, small fixes 2018-08-13 11:00:53 +02:00			`comment = c(ORCID = "0000-0003-1634-0010")))`
breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00			`Description: Functions to simplify the analysis and prediction of Antimicrobial`
better as.mo handling 2018-12-06 14:36:39 +01:00			`Resistance (AMR) and to work with microbial and antimicrobial properties by`
			`using evidence-based methods.`
update dependencies 2018-04-02 16:05:09 +02:00			`Depends:`
new ggplot enhancement 2018-08-11 21:30:00 +02:00			`R (>= 3.1.0)`
update dependencies 2018-04-02 16:05:09 +02:00			`Imports:`
Try to support older R versions 2018-04-19 14:10:57 +02:00			`backports,`
atc_groups 2018-06-19 10:05:38 +02:00			`curl,`
new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00			`crayon (>= 1.3.0),`
first inclusion of ITIS data 2018-09-24 23:33:29 +02:00			`data.table (>= 1.9.0),`
update dependencies 2018-04-02 16:05:09 +02:00			`dplyr (>= 0.7.0),`
dependencies 2018-08-23 22:05:17 +02:00			`hms,`
MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00			`knitr (>= 1.0.0),`
unit tests 2018-08-23 01:01:50 +02:00			`rlang (>= 0.2.0),`
dependencies 2018-08-23 22:05:17 +02:00			`rvest (>= 0.3.2),`
breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00			`tidyr (>= 0.7.0),`
dependencies 2018-08-23 22:05:17 +02:00			`xml2 (>= 1.0.0)`
update dependencies 2018-04-02 16:05:09 +02:00			`Suggests:`
added vignette of freq 2018-05-09 11:44:46 +02:00			`covr (>= 3.0.1),`
dependencies 2018-08-23 22:05:17 +02:00			`ggplot2,`
addins and small improvements to microorganisms dataset 2018-07-04 17:20:03 +02:00			`rmarkdown,`
freq: support for table 2018-07-09 14:02:58 +02:00			`rstudioapi,`
breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00			`testthat (>= 1.0.2)`
added vignette of freq 2018-05-09 11:44:46 +02:00			`VignetteBuilder: knitr`
new website, freq updates 2018-12-29 22:24:19 +01:00			`URL: https://msberends.gitlab.io/AMR, https://gitlab.com/msberends/AMR`
switch to gitlab 2018-10-23 16:49:40 +02:00			`BugReports: https://gitlab.com/msberends/AMR/issues`
first commit 2018-02-21 11:52:31 +01:00			`License: GPL-2 \| file LICENSE`
			`Encoding: UTF-8`
			`LazyData: true`
read.4D improvements 2018-11-15 12:42:35 +01:00			`RoxygenNote: 6.1.1`