AMR/R/globals.R

68 lines
2.6 KiB
R
Raw Normal View History

2018-02-21 11:52:31 +01:00
# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# AUTHORS #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# LICENCE #
# This program is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0, #
# as published by the Free Software Foundation. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# ==================================================================== #
globalVariables(c('abname',
2018-07-26 16:30:42 +02:00
'antibiotic',
'antibiotics',
2018-04-25 15:33:58 +02:00
'atc',
2018-02-21 11:52:31 +01:00
'bactid',
2018-07-10 12:27:07 +02:00
'C_chisq_sim',
2018-02-21 11:52:31 +01:00
'cnt',
2018-06-20 14:47:37 +02:00
'count',
2018-07-09 14:02:58 +02:00
'counts',
2018-07-01 21:40:37 +02:00
'cum_count',
'cum_percent',
2018-02-21 11:52:31 +01:00
'date_lab',
'days_diff',
2018-07-01 21:40:37 +02:00
'fctlvl',
2018-02-21 11:52:31 +01:00
'first_isolate_row_index',
2018-07-11 12:34:02 +02:00
'Freq',
'fullname',
2018-02-21 11:52:31 +01:00
'genus',
'gramstain',
2018-06-20 14:47:37 +02:00
'item',
2018-02-21 11:52:31 +01:00
'key_ab',
'key_ab_lag',
'key_ab_other',
2018-07-08 22:14:55 +02:00
'labs',
2018-06-20 14:47:37 +02:00
'median',
2018-02-21 11:52:31 +01:00
'mic',
2018-07-15 22:56:41 +02:00
'MIC',
'microorganisms',
2018-03-19 21:23:21 +01:00
'mocode',
2018-04-25 15:33:58 +02:00
'molis',
2018-02-21 11:52:31 +01:00
'n',
2018-07-08 22:14:55 +02:00
'na.omit',
2018-07-26 16:30:42 +02:00
'observations',
'official',
2018-02-21 11:52:31 +01:00
'other_pat_or_mo',
2018-07-11 12:34:02 +02:00
'Pasted',
2018-02-21 11:52:31 +01:00
'patient_id',
'quantile',
2018-07-26 16:30:42 +02:00
'R',
2018-02-21 11:52:31 +01:00
'real_first_isolate',
2018-07-26 16:30:42 +02:00
'S',
'septic_patients',
2018-02-21 11:52:31 +01:00
'species',
2018-04-25 15:33:58 +02:00
'umcg',
2018-07-28 09:34:03 +02:00
'value',
2018-07-09 14:02:58 +02:00
'values',
'View',
'y',
'.'))