AMR/R/globals.R

# ==================================================================== #
# TITLE                                                                #
# Antimicrobial Resistance (AMR) Analysis                              #
#                                                                      #
# AUTHORS                                                              #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl)           #
#                                                                      #
# LICENCE                                                              #
# This program is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0,    #
# as published by the Free Software Foundation.                        #
#                                                                      #
# This program is distributed in the hope that it will be useful,      #
# but WITHOUT ANY WARRANTY; without even the implied warranty of       #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the        #
# GNU General Public License for more details.                         #
# ==================================================================== #

globalVariables(c('abname',
                  'antibiotic',
                  'antibiotics',
                  'atc',
                  'bactid',
                  'C_chisq_sim',
                  'cnt',
                  'count',
                  'counts',
                  'cum_count',
                  'cum_percent',
                  'date_lab',
                  'days_diff',
                  'fctlvl',
                  'first_isolate_row_index',
                  'Freq',
                  'fullname',
                  'genus',
                  'gramstain',
                  'item',
                  'key_ab',
                  'key_ab_lag',
                  'key_ab_other',
                  'labs',
                  'median',
                  'mic',
                  'MIC',
                  'microorganisms',
                  'mocode',
                  'molis',
                  'n',
                  'na.omit',
                  'observations',
                  'official',
                  'other_pat_or_mo',
                  'Pasted',
                  'patient_id',
                  'quantile',
                  'R',
                  'real_first_isolate',
                  'S',
                  'septic_patients',
                  'species',
                  'umcg',
                  'value',
                  'values',
                  'View',
                  'y',
                  '.'))