AMR/.gitlab-ci.yml

# from https://stackoverflow.com/questions/51866926
# and https://github.com/jangorecki/r.gitlab.ci
# and https://docs.gitlab.com/ce/ci/yaml/README.html
# how the Docker+R images work: https://hub.docker.com/r/rocker/r-ver/
R 3:
    image: rocker/r-ver:3 # test on R v3.*.*
    allow_failure: true
    script:
      - apt-get update
      # install dependencies for package
      - apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
      - Rscript -e 'install.packages(c("devtools", "rlang"), repos = "https://cran.rstudio.com")'
      - Rscript -e 'devtools::install_dev_deps(repos = "https://cran.rstudio.com")'
      # remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
      - rm -rf vignettes
      - Rscript -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
      # build package
      - R CMD build . --no-build-vignettes --no-manual
      - PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
      - R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
      # code coverage
      - apt-get install --yes git
      - Rscript -e 'cc <- covr::package_coverage(); covr::codecov(coverage = cc, token = "50ffa0aa-fee0-4f8b-a11d-8c7edc6d32ca"); cat("Code coverage:", covr::percent_coverage(cc))'
    coverage: '/Code coverage: \d+\.\d+/'
    artifacts:
      paths:
        - '*.Rcheck/*.log'
        - '*.Rcheck/*.out'
        # - '*.Rcheck/*.fail'
        - '*.Rcheck/*.Rout'
      name: 'Rcheck log'
      expire_in: '1 month'

pages:
  image: debian:buster-slim
  script:
    - apt-get update && apt-get -y install libxml2-dev libssl-dev libcurl4-openssl-dev pandoc r-base
    - Rscript -e "install.packages(c('pkgdown', 'devtools'), repos = 'https://cran.rstudio.com')"
    - Rscript -e "devtools::install_dev_deps(repos = 'https://cran.rstudio.com')"
    - Rscript -e "devtools::install(build = TRUE, upgrade = FALSE)"
    # - R -e "pkgdown::build_favicon()"
    - R -e "pkgdown::build_site(examples = FALSE)"
  artifacts:
    paths:
      - public
  only:
    - master