2019-09-25 15:43:22 +02:00
<!DOCTYPE html>
2021-07-23 21:42:11 +02:00
<!-- Generated by pkgdown: do not edit by hand --> < html lang = "en" >
< head >
< meta http-equiv = "Content-Type" content = "text/html; charset=UTF-8" >
< meta charset = "utf-8" >
2019-09-25 15:43:22 +02:00
< meta http-equiv = "X-UA-Compatible" content = "IE=edge" >
< meta name = "viewport" content = "width=device-width, initial-scale=1.0" >
< title > Page not found (404) • AMR (for R)< / title >
2021-07-23 21:42:11 +02:00
<!-- favicons --> < link rel = "icon" type = "image/png" sizes = "16x16" href = "https://msberends.github.io/AMR/favicon-16x16.png" >
< link rel = "icon" type = "image/png" sizes = "32x32" href = "https://msberends.github.io/AMR/favicon-32x32.png" >
< link rel = "apple-touch-icon" type = "image/png" sizes = "180x180" href = "https://msberends.github.io/AMR/apple-touch-icon.png" >
< link rel = "apple-touch-icon" type = "image/png" sizes = "120x120" href = "https://msberends.github.io/AMR/apple-touch-icon-120x120.png" >
< link rel = "apple-touch-icon" type = "image/png" sizes = "76x76" href = "https://msberends.github.io/AMR/apple-touch-icon-76x76.png" >
< link rel = "apple-touch-icon" type = "image/png" sizes = "60x60" href = "https://msberends.github.io/AMR/apple-touch-icon-60x60.png" >
<!-- jquery --> < script src = "https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity = "sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin = "anonymous" > < / script > <!-- Bootstrap --> < link href = "https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/flatly/bootstrap.min.css" rel = "stylesheet" crossorigin = "anonymous" >
< script src = "https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity = "sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin = "anonymous" > < / script > <!-- bootstrap - toc --> < link rel = "stylesheet" href = "https://msberends.github.io/AMR/bootstrap-toc.css" >
< script src = "https://msberends.github.io/AMR/bootstrap-toc.js" > < / script > <!-- Font Awesome icons --> < link rel = "stylesheet" href = "https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity = "sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin = "anonymous" >
< link rel = "stylesheet" href = "https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity = "sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin = "anonymous" >
<!-- clipboard.js --> < script src = "https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity = "sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin = "anonymous" > < / script > <!-- headroom.js --> < script src = "https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity = "sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin = "anonymous" > < / script > < script src = "https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity = "sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin = "anonymous" > < / script > <!-- pkgdown --> < link href = "https://msberends.github.io/AMR/pkgdown.css" rel = "stylesheet" >
< script src = "https://msberends.github.io/AMR/pkgdown.js" > < / script > < link href = "https://msberends.github.io/AMR/extra.css" rel = "stylesheet" >
< script src = "https://msberends.github.io/AMR/extra.js" > < / script > < meta property = "og:title" content = "Page not found (404)" >
< meta property = "og:image" content = "https://msberends.github.io/AMR/logo.png" >
2021-08-16 21:54:34 +02:00
< meta name = "twitter:card" content = "summary_large_image" >
< meta name = "twitter:creator" content = "@msberends" >
< meta name = "twitter:site" content = "@univgroningen" >
2021-07-23 21:42:11 +02:00
<!-- mathjax --> < script src = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity = "sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin = "anonymous" > < / script > < script src = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity = "sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin = "anonymous" > < / script > <!-- [if lt IE 9]>
2019-09-25 15:43:22 +02:00
< script src = "https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js" > < / script >
< script src = "https://oss.maxcdn.com/respond/1.4.2/respond.min.js" > < / script >
<![endif]-->
2021-07-23 21:42:11 +02:00
< / head >
< body data-spy = "scroll" data-target = "#toc" >
2019-09-25 15:43:22 +02:00
< div class = "container template-title-body" >
2021-07-23 21:42:11 +02:00
< header > < div class = "navbar navbar-default navbar-fixed-top" role = "navigation" >
2019-09-25 15:43:22 +02:00
< div class = "container" >
< div class = "navbar-header" >
< button type = "button" class = "navbar-toggle collapsed" data-toggle = "collapse" data-target = "#navbar" aria-expanded = "false" >
< span class = "sr-only" > Toggle navigation< / span >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< / button >
< span class = "navbar-brand" >
2021-07-23 21:42:11 +02:00
< a class = "navbar-link" href = "https://msberends.github.io/AMR/index.html" > AMR (for R)< / a >
2021-08-29 23:50:45 +02:00
< span class = "version label label-default" data-toggle = "tooltip" data-placement = "bottom" title = "Latest development version" > 1.7.1.9030< / span >
2019-09-25 15:43:22 +02:00
< / span >
< / div >
< div id = "navbar" class = "navbar-collapse collapse" >
< ul class = "nav navbar-nav" >
2021-07-23 21:42:11 +02:00
< li >
< a href = "https://msberends.github.io/AMR/index.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-home" > < / span >
2019-09-25 15:43:22 +02:00
Home
< / a >
< / li >
< li class = "dropdown" >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-question-circle" > < / span >
2019-09-25 15:43:22 +02:00
How to
< span class = "caret" > < / span >
< / a >
< ul class = "dropdown-menu" role = "menu" >
2021-07-23 21:42:11 +02:00
< li >
< a href = "https://msberends.github.io/AMR/articles/AMR.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-directions" > < / span >
2019-09-25 15:43:22 +02:00
Conduct AMR analysis
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/resistance_predict.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-dice" > < / span >
2019-09-25 15:43:22 +02:00
Predict antimicrobial resistance
< / a >
< / li >
2020-08-16 21:38:42 +02:00
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/datasets.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-database" > < / span >
2020-08-16 21:38:42 +02:00
2020-09-03 12:31:48 +02:00
Data sets for download / own use
2020-08-16 21:38:42 +02:00
< / a >
< / li >
2020-03-07 21:48:21 +01:00
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/PCA.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-compress" > < / span >
2020-03-07 21:48:21 +01:00
Conduct principal component analysis for AMR
< / a >
< / li >
2019-09-25 15:43:22 +02:00
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/MDR.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-skull-crossbones" > < / span >
2019-09-25 15:43:22 +02:00
Determine multi-drug resistance (MDR)
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/WHONET.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-globe-americas" > < / span >
2019-09-25 15:43:22 +02:00
Work with WHONET data
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/SPSS.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-file-upload" > < / span >
2019-09-25 15:43:22 +02:00
Import data from SPSS/SAS/Stata
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/EUCAST.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-exchange-alt" > < / span >
2019-09-25 15:43:22 +02:00
Apply EUCAST rules
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/reference/mo_property.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-bug" > < / span >
2019-09-25 15:43:22 +02:00
Get properties of a microorganism
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/reference/ab_property.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-capsules" > < / span >
2019-09-25 15:43:22 +02:00
Get properties of an antibiotic
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/articles/benchmarks.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-shipping-fast" > < / span >
2019-09-25 15:43:22 +02:00
Other: benchmarks
< / a >
< / li >
< / ul >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/reference/index.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-book-open" > < / span >
2019-09-25 15:43:22 +02:00
Manual
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/authors.html" >
2021-07-03 21:56:53 +02:00
< span class = "fa fa-users" > < / span >
2019-09-25 15:43:22 +02:00
Authors
< / a >
< / li >
< li >
2021-07-23 21:42:11 +02:00
< a href = "https://msberends.github.io/AMR/news/index.html" >
2021-04-29 17:16:30 +02:00
< span class = "far fa-newspaper" > < / span >
2019-09-25 15:43:22 +02:00
Changelog
< / a >
< / li >
< / ul >
2021-07-23 21:42:11 +02:00
< ul class = "nav navbar-nav navbar-right" >
< li >
2020-07-08 14:48:06 +02:00
< a href = "https://github.com/msberends/AMR" >
2021-04-29 17:16:30 +02:00
< span class = "fab fa-github" > < / span >
2019-09-25 15:43:22 +02:00
Source Code
< / a >
< / li >
< / ul >
2021-07-23 21:42:11 +02:00
< / div >
<!-- /.nav - collapse -->
< / div >
<!-- /.container -->
< / div >
<!-- /.navbar -->
2019-09-25 15:43:22 +02:00
2021-07-23 21:42:11 +02:00
< / header > < div class = "row" >
2019-09-25 15:43:22 +02:00
< div class = "contents col-md-9" >
< div class = "page-header" >
< h1 > Page not found (404)< / h1 >
< / div >
Content not found. Please use links in the navbar.
< / div >
2020-04-13 21:09:56 +02:00
< div class = "col-md-3 hidden-xs hidden-sm" id = "pkgdown-sidebar" >
2021-07-23 21:42:11 +02:00
< nav id = "toc" data-toggle = "toc" class = "sticky-top" > < h2 data-toc-skip > Contents< / h2 >
2020-04-13 21:09:56 +02:00
< / nav >
2021-07-23 21:42:11 +02:00
< / div >
2020-04-13 21:09:56 +02:00
2019-09-25 15:43:22 +02:00
< / div >
2021-07-23 21:42:11 +02:00
< footer > < div class = "copyright" >
< p > < / p >
< p > Developed by < a href = "https://www.rug.nl/staff/m.s.berends/" class = "external-link" > Matthijs S. Berends< / a > , < a href = "https://www.rug.nl/staff/c.f.luz/" class = "external-link" > Christian F. Luz< / a > , < a href = "https://www.rug.nl/staff/a.w.friedrich/" class = "external-link" > Alexander W. Friedrich< / a > , < a href = "https://www.rug.nl/staff/b.sinha/" class = "external-link" > Bhanu N. M. Sinha< / a > , < a href = "https://www.rug.nl/staff/c.j.albers/" class = "external-link" > Casper J. Albers< / a > , < a href = "https://www.rug.nl/staff/c.glasner/" class = "external-link" > Corinna Glasner< / a > .< / p >
2019-09-25 15:43:22 +02:00
< / div >
< div class = "pkgdown" >
2021-07-23 21:42:11 +02:00
< p > < / p >
< p > Site built with < a href = "https://pkgdown.r-lib.org/" class = "external-link" > pkgdown< / a > 1.6.1.9001.< / p >
2019-09-25 15:43:22 +02:00
< / div >
< / footer >
2021-07-23 21:42:11 +02:00
< / div >
2019-09-25 15:43:22 +02:00
2021-07-23 21:42:11 +02:00
2019-09-25 15:43:22 +02:00
< / body >
< / html >
