AMR/inst/tinytest/test-join_microorganisms.R

58 lines
2.9 KiB
R
Raw Normal View History

2019-01-11 20:37:23 +01:00
# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Data Analysis for R #
2019-01-11 20:37:23 +01:00
# #
# SOURCE #
2020-07-08 14:48:06 +02:00
# https://github.com/msberends/AMR #
2019-01-11 20:37:23 +01:00
# #
# LICENCE #
2020-12-27 00:30:28 +01:00
# (c) 2018-2021 Berends MS, Luz CF et al. #
2020-10-08 11:16:03 +02:00
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
2019-01-11 20:37:23 +01:00
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
2020-10-08 11:16:03 +02:00
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
2019-01-11 20:37:23 +01:00
# ==================================================================== #
2021-05-15 21:36:22 +02:00
unjoined <- example_isolates
inner <- example_isolates %>% inner_join_microorganisms()
left <- example_isolates %>% left_join_microorganisms()
semi <- example_isolates %>% semi_join_microorganisms()
anti <- example_isolates %>% anti_join_microorganisms()
suppressWarnings(right <- example_isolates %>% right_join_microorganisms())
suppressWarnings(full <- example_isolates %>% full_join_microorganisms())
expect_true(ncol(unjoined) < ncol(inner))
expect_true(nrow(unjoined) == nrow(inner))
expect_true(ncol(unjoined) < ncol(left))
expect_true(nrow(unjoined) == nrow(left))
expect_true(ncol(semi) == ncol(semi))
expect_true(nrow(semi) == nrow(semi))
expect_true(nrow(anti) == 0)
expect_true(nrow(unjoined) < nrow(right))
expect_true(nrow(unjoined) < nrow(full))
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COLI")), 1)
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COLI", by = c("mo" = "mo"))), 1)
expect_equal(nrow(left_join_microorganisms("B_ESCHR_COLI")), 1)
expect_equal(nrow(semi_join_microorganisms("B_ESCHR_COLI")), 1)
expect_equal(nrow(anti_join_microorganisms("B_ESCHR_COLI")), 0)
expect_warning(right_join_microorganisms("B_ESCHR_COLI"))
expect_warning(full_join_microorganisms("B_ESCHR_COLI"))