(v3.0.0.9022) postpone new features - we like a clearly focussed bugfix release first

.github/workflows/todo-tracker.yml

@@ -0,0 +1,75 @@
+# ==================================================================== #
+# TITLE:                                                               #
+# AMR: An R Package for Working with Antimicrobial Resistance Data     #
+#                                                                      #
+# SOURCE CODE:                                                         #
+# https://github.com/msberends/AMR                                     #
+#                                                                      #
+# PLEASE CITE THIS SOFTWARE AS:                                        #
+# Berends MS, Luz CF, Friedrich AW, et al. (2022).                     #
+# AMR: An R Package for Working with Antimicrobial Resistance Data.    #
+# Journal of Statistical Software, 104(3), 1-31.                       #
+# https://doi.org/10.18637/jss.v104.i03                                #
+#                                                                      #
+# Developed at the University of Groningen and the University Medical  #
+# Center Groningen in The Netherlands, in collaboration with many      #
+# colleagues from around the world, see our website.                   # 
+#                                                                      #
+# This R package is free software; you can freely use and distribute   #
+# it for both personal and commercial purposes under the terms of the  #
+# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
+# the Free Software Foundation.                                        #
+# We created this package for both routine data analysis and academic  #
+# research and it was publicly released in the hope that it will be    #
+# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
+#                                                                      #
+# Visit our website for the full manual and a complete tutorial about  #
+# how to conduct AMR data analysis: https://amr-for-r.org              #
+# ==================================================================== #
+
+on:
+  push:
+    # only on main
+    branches: "main"
+
+name: Update TODO Tracker
+
+jobs:
+  update-todo:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Generate TODO list from R/
+        run: |
+          echo "## TODO Report" > todo.md
+          echo "" >> todo.md
+          echo "_This issue is automatically updated on each push to `main`._" >> todo.md
+          echo "" >> todo.md
+          todos=$(find R/ -type f ! -name "sysdata.rda" -exec grep -nH "TODO" {} + || true)
+          if [ -z "$todos" ]; then
+            echo "✅ No TODOs found." >> todo.md
+          else
+            echo "$todos" | awk -F: '
+              {
+                file = $1
+                line = $2
+                text = substr($0, index($0,$3))
+                if (file != last_file) {
+                  if (last_file != "") print ""
+                  print "### " file
+                  last_file = file
+                }
+                printf "L%s: %s\n", line, text
+              }
+            ' >> todo.md
+          fi
+
+      - name: Update GitHub issue
+        uses: peter-evans/create-or-update-comment@v4
+        with:
+          token: ${{ secrets.GH_REPO_SCOPE }}
+          issue-number: 231
+          body-file: todo.md
+          edit-mode: replace