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(v3.0.1.9131) Remove the list of breaking changes from cran-comments.md

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dr. M.S. (Matthijs) Berends committed 2026-10-13 22:30:31 +02:00
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DESCRIPTION
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Package: AMR
Version: 3.0.1.9130
Version: 3.0.1.9131
Date: 2026-10-13
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
NEWS.md
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# AMR 3.0.1.9130
# AMR 3.0.1.9131
Planned as v3.1.0, mid October 2026.
cran-comments.md
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This version is a minor release (v3.1.0) following the bugfix release v3.0.1 in September 2025. It adds the EUCAST 2026 and CLSI 2026 clinical breakpoints (EUCAST 2026 is now the default), a taxonomic update of all microorganisms, unified EUCAST and CLSI interpretive rules, support for `tidymodels` pipelines, and many improvements and bug fixes, as listed in `NEWS.md`.
This release contains four breaking changes, each documented in `NEWS.md`:
* Following the reclassification of Bacteria and Archaea into new kingdoms (Göker and Oren, 2024), `mo_kingdom()` now returns the formal kingdom, while the new function `mo_domain()` returns the former output
* Parallel computing in `as.sir()`, `antibiogram()`, and `wisca()` now uses the suggested packages `future` and `future.apply`
* The options of the `capped_mic_handling` argument of `as.sir()` have been redefined
* `as.sir()` now returns WT/NWT (wildtype/non-wildtype) instead of S/R for interpretation based on epidemiological cut-off values (ECOFFs)
This package has two reverse dependencies, `MIC` and `MIMER`, both checked against this version. `MIMER` passes. `MIC` is affected by the WT/NWT change, which makes some of its unit tests fail; its maintainer has been informed in advance through an issue in its GitHub repository.
This package has two reverse dependencies, `MIC` and `MIMER`, both checked against this version. `MIMER` passes. `MIC` is affected by a change in the output of `as.sir()` for interpretation based on epidemiological cut-off values (ECOFFs), which makes some of its unit tests fail; its maintainer has been informed in advance through an issue in its GitHub repository.
As with all previous >20 releases, some CHECKs on `oldrel` may return a `NOTE` for narrowly exceeding the installation size limit. This has been reduced to a minimum in prior coordination with CRAN maintainers and currently returns only an `INFO` on `release` and `devel`.