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Built site for AMR: 2.0.0.9024@f065945

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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9023</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9024</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -204,7 +204,7 @@
website update since they are based on randomly created values and the
page was written in <a href="https://rmarkdown.rstudio.com/" class="external-link">R
Markdown</a>. However, the methodology remains unchanged. This page was
generated on 27 May 2023.</p>
generated on 22 June 2023.</p>
<div class="section level2">
<h2 id="introduction">Introduction<a class="anchor" aria-label="anchor" href="#introduction"></a>
</h2>
@ -260,21 +260,21 @@ make the structure of your data generally look like this:</p>
</tr></thead>
<tbody>
<tr class="odd">
<td align="center">2023-05-27</td>
<td align="center">2023-06-22</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">S</td>
</tr>
<tr class="even">
<td align="center">2023-05-27</td>
<td align="center">2023-06-22</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">R</td>
</tr>
<tr class="odd">
<td align="center">2023-05-27</td>
<td align="center">2023-06-22</td>
<td align="center">efgh</td>
<td align="center">Escherichia coli</td>
<td align="center">R</td>
@ -405,11 +405,11 @@ taxonomic codes. Let’s check this:</p>
<span><span class="co">#&gt; --------------------------------------------------------------------------------</span></span>
<span><span class="co">#&gt; "S. aureus" -&gt; Staphylococcus aureus (B_STPHY_AURS, 0.690)</span></span>
<span><span class="co">#&gt; Also matched: Staphylococcus aureus aureus (0.643), Staphylococcus</span></span>
<span><span class="co">#&gt; argenteus (0.625), Staphylococcus aureus anaerobius (0.625),</span></span>
<span><span class="co">#&gt; Streptomyces argenteolus (0.483), Streptomyces aureus (0.474),</span></span>
<span><span class="co">#&gt; Streptomyces azureus (0.467), Streptomyces aureorectus (0.444),</span></span>
<span><span class="co">#&gt; Streptomyces auratus (0.433), Streptomyces aurantiogriseus (0.429), and</span></span>
<span><span class="co">#&gt; Streptomyces aureocirculatus (0.429)</span></span>
<span><span class="co">#&gt; argenteus (0.625), Staphylococcus aureus anaerobius (0.625), Salmonella</span></span>
<span><span class="co">#&gt; Aurelianis (0.595), Salmonella Aarhus (0.588), Salmonella Amounderness</span></span>
<span><span class="co">#&gt; (0.587), Selenomonas artemidis (0.571), Salmonella choleraesuis</span></span>
<span><span class="co">#&gt; arizonae (0.562), Streptococcus anginosus anginosus (0.561), and</span></span>
<span><span class="co">#&gt; Salmonella Abaetetuba (0.548)</span></span>
<span><span class="co">#&gt; --------------------------------------------------------------------------------</span></span>
<span><span class="co">#&gt; "S. pneumoniae" -&gt; Streptococcus pneumoniae (B_STRPT_PNMN, 0.750)</span></span>
<span><span class="co">#&gt; Also matched: Streptococcus pseudopneumoniae (0.700), Serratia</span></span>