1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-25 19:26:13 +01:00

(v2.1.1.9046) unit test fix

This commit is contained in:
dr. M.S. (Matthijs) Berends 2024-06-12 14:37:44 +02:00
parent c753afcd76
commit cd1b37ff69
4 changed files with 8 additions and 8 deletions

View File

@ -1,5 +1,5 @@
Package: AMR
Version: 2.1.1.9045
Version: 2.1.1.9046
Date: 2024-06-12
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)

View File

@ -1,4 +1,4 @@
# AMR 2.1.1.9045
# AMR 2.1.1.9046
*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support!)*

View File

@ -1,12 +1,14 @@
# The `AMR` Package for R <a href="https://msberends.github.io/AMR/"><img src="./logo.svg" align="right" height="139" /></a>
* Provides an **all-in-one solution** for AMR data analysis in a One Health approach
* Used in over 175 countries, translated into 20 languages
* Generates **antibiograms** - traditional, combined, syndromic, and even WISCA
* Provides the **full microbiological taxonomy** and extensive info on **all antimicrobial drugs**
* Applies all recent **CLSI and EUCAST clinical and veterinary breakpoints** for MICs and disk zones
* Corrects for duplicate isolates, **calculates and predicts AMR** per antibiotic class
* Applies all recent **CLSI** and **EUCAST** clinical and veterinary breakpoints for MICs and disk zones
* Corrects for duplicate isolates using 4 methods, **calculates** and **predicts** AMR per antibiotic class
* Integrates with **WHONET**, ATC, **EARS-Net**, PubChem, **LOINC**, **SNOMED CT**, and **NCBI**
* Works on Windows, macOS and Linux with **all versions of R** since R-3.0 and is completely **dependency-free**, highly suitable for places with **limited resources**
* 100% free of costs and dependencies, highly suitable for places with **limited resources**
* **Easy to use** and **easy to learn**, with a **community** of contributors from around the globe
<div style="display: flex; font-size: 0.8em;">
<p style="text-align:left; width: 50%;"><small><a href="https://msberends.github.io/AMR/">https://msberends.github.io/AMR</a></small></p>

View File

@ -95,10 +95,8 @@ if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) {
example_isolates %>% select(AMX) %>% count_df(combine_SI = FALSE) %>% pull(value),
c(
suppressWarnings(example_isolates$AMX %>% count_S()),
0,
example_isolates$AMX %>% count_I(),
example_isolates$AMX %>% count_R(),
0
example_isolates$AMX %>% count_R()
)
)