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cleanup

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dr. M.S. (Matthijs) Berends 2022-11-13 07:39:44 +01:00
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commit d033da29b8
1 changed files with 5 additions and 3 deletions
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vignettes/datasets.Rmd
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@ -156,7 +156,7 @@ microorganisms %>%
``` ```
## `antibiotics`: Antibiotic Agents ## `antibiotics`: Antibiotic (+Antifungal) Drugs
`r structure_txt(antibiotics)` `r structure_txt(antibiotics)`
@ -173,6 +173,7 @@ This data set contains all EARS-Net and ATC codes gathered from WHO and WHONET,
* [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use) * [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use)
* [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov) * [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov)
* [WHONET software 2019](https://whonet.org) * [WHONET software 2019](https://whonet.org)
* [LOINC (Logical Observation Identifiers Names and Codes](https://loinc.org)
### Example content ### Example content
@ -183,7 +184,7 @@ antibiotics %>%
``` ```
## `antivirals`: Antiviral Agents ## `antivirals`: Antiviral Drugs
`r structure_txt(antivirals)` `r structure_txt(antivirals)`
@ -191,7 +192,7 @@ This data set is in R available as `antivirals`, after you load the `AMR` packag
`r download_txt("antivirals")` `r download_txt("antivirals")`
The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the trade names as comma separated values. The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the trade names and LOINC codes as comma separated values.
### Source ### Source
@ -199,6 +200,7 @@ This data set contains all ATC codes gathered from WHO and all compound IDs from
* [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use) * [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use)
* [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov) * [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov)
* [LOINC (Logical Observation Identifiers Names and Codes](https://loinc.org)
### Example content ### Example content