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(v1.2.0.9040) conserve_capped_values for as.rsi()
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Package: AMR
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Version: 1.2.0.9039
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Version: 1.2.0.9040
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Date: 2020-07-29
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Title: Antimicrobial Resistance Analysis
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Authors@R: c(
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2
NEWS.md
2
NEWS.md
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# AMR 1.2.0.9039
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# AMR 1.2.0.9040
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## <small>Last updated: 29 July 2020</small>
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### New
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1
R/rsi.R
1
R/rsi.R
@ -261,7 +261,6 @@ as.rsi.disk <- function(x,
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ab = deparse(substitute(x)),
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guideline = "EUCAST",
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uti = FALSE,
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conserve_capped_values = FALSE,
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...) {
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stop_if(missing(mo),
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'No information was supplied about the microorganisms (missing parameter "mo"). See ?as.rsi.\n\n',
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="https://msberends.github.io/AMR/index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -93,6 +93,7 @@ $(document).ready(function() {
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$('.template-citation-authors h1').eq(0).text('How to cite');
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$('.template-citation-authors h1').eq(1).text('All contributors');
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$(".developers").html(doct_tit($(".developers").html()));
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$(".developers a[href='authors.html']").text("All contributors...");
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// Edit title of manual
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$('.template-reference-index h1').text('Manual');
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@ -43,7 +43,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -229,9 +229,9 @@
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<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
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</div>
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<div id="amr-1209039" class="section level1">
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<h1 class="page-header" data-toc-text="1.2.0.9039">
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<a href="#amr-1209039" class="anchor"></a>AMR 1.2.0.9039<small> Unreleased </small>
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<div id="amr-1209040" class="section level1">
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<h1 class="page-header" data-toc-text="1.2.0.9040">
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<a href="#amr-1209040" class="anchor"></a>AMR 1.2.0.9040<small> Unreleased </small>
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</h1>
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<div id="last-updated-29-july-2020" class="section level2">
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<h2 class="hasAnchor">
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@ -10,7 +10,7 @@ articles:
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WHONET: WHONET.html
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benchmarks: benchmarks.html
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resistance_predict: resistance_predict.html
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last_built: 2020-07-29T09:46Z
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last_built: 2020-07-29T10:44Z
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urls:
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reference: https://msberends.github.io/AMR/reference
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article: https://msberends.github.io/AMR/articles
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@ -82,7 +82,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -255,7 +255,6 @@
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<span class='kw'>ab</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span>(<span class='no'>x</span>)),
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<span class='kw'>guideline</span> <span class='kw'>=</span> <span class='st'>"EUCAST"</span>,
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<span class='kw'>uti</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
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<span class='kw'>conserve_capped_values</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
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<span class='no'>...</span>
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)
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -81,7 +81,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9040</span>
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</span>
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</div>
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@ -28,7 +28,6 @@ as.rsi(x, ...)
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ab = deparse(substitute(x)),
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guideline = "EUCAST",
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uti = FALSE,
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conserve_capped_values = FALSE,
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...
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)
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@ -93,6 +93,7 @@ $(document).ready(function() {
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$('.template-citation-authors h1').eq(0).text('How to cite');
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$('.template-citation-authors h1').eq(1).text('All contributors');
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$(".developers").html(doct_tit($(".developers").html()));
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$(".developers a[href='authors.html']").text("All contributors...");
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// Edit title of manual
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$('.template-reference-index h1').text('Manual');
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