Matthijs Berends
03be4b87fc
(v3.0.1.9079) docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'
...
* docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'
Five leftover occurrences of the old terminology updated in the AMR
vignette (section heading + code comment), the amr_selectors test file,
and two roxygen example comments in amr_selectors.R. The auto-generated
man/antimicrobial_selectors.Rd will update on the next devtools::document() run.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
Claude-Session: https://claude.ai/code/session_0169LucQ7SHDLHdTnDs1ENhd
* fix
---------
Co-authored-by: Claude <noreply@anthropic.com >
2026-06-27 14:31:58 +02:00
Matthijs Berends
02bd9a71c1
(v3.0.1.9076) document Python installation channels and enforce_method in vignette ( #296 )
2026-06-26 15:03:07 +02:00
bd63794136
(v3.0.1.9064) Documentation updates
2026-06-24 18:32:08 +02:00
9898b5df4b
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
Matthijs Berends
3f9f931777
(v3.0.1.9059) Update taxonomy of microorganisms
2026-06-23 01:38:13 +02:00
Matthijs Berends
8ff5d4472a
Add add_if_missing parameter to control NA handling in interpretive rules ( #264 )
2026-04-21 21:53:43 +02:00
9d1b4565f6
(v3.0.1.9008) fix #246
...
Merge branch 'main' of https://github.com/msberends/AMR
# Conflicts:
# DESCRIPTION
# NEWS.md
# R/sysdata.rda
# data/antibiotics.rda
2026-01-06 23:11:34 +01:00
cfbbfb4fa5
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
35debe25ee
(v3.0.1.9009) tidymodels vignette
2025-12-23 11:02:26 +01:00
e9cf3d5572
(v3.0.1.9008) tidymodels vignette
2025-12-22 19:04:39 +01:00
a5c6aa9fa8
(v3.0.1.9007) fix vignette
2025-12-22 09:34:58 +01:00
151af21f38
(v3.0.1.9005) re-add tidymodels implementation
2025-12-21 12:19:43 +01:00
c7b2acbeb6
(v3.0.0.9029) fix for vignette and envir data
2025-09-10 16:19:30 +02:00
d5a568318b
(v3.0.0.9026) fix tidymodels doc
2025-09-04 15:03:28 +02:00
72db2b2562
(v3.0.0.9003) eucast_rules fix, new tidymodels integration
2025-06-13 14:03:21 +02:00
5667ce3eae
(v2.1.1.9287) fix antibiotics
2025-06-01 12:17:47 +02:00
139f79d372
(v2.1.1.9278) support AMR selectors in custom MDRO guideline
2025-05-16 11:20:19 +02:00
a778eb9bcf
(v2.1.1.9272) (v2.1.1.9271) add sensititre AB and animal codes
2025-05-04 16:40:08 +02:00
2461631bce
(v2.1.1.9268) WISCA vignette, antibiogram sorting, fix translations
2025-05-01 14:45:21 +02:00
c70ac149ff
new WISCA vignette
2025-04-30 17:33:03 +02:00
Matthijs Berends
04aec39371
Update welcome_to_AMR.Rmd ( #205 )
2025-04-29 17:10:43 +02:00
407bc17311
(v2.1.1.9263) small as.sir fix
2025-04-29 16:51:29 +02:00
faa9ae0d85
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
ec937e8179
(v2.1.1.9239) documentation
2025-04-14 09:40:35 +02:00
d31371613e
(v2.1.1.9237) clean-up
2025-04-13 09:59:40 +02:00
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
5f5b77bfaf
(v2.1.1.9231) Update EUCAST vignette
2025-03-29 18:03:31 +01:00
b972bbb96f
(v2.1.1.9230) deprecated resistance_predict(), data set folder name without space
2025-03-28 16:48:56 +01:00
bd873ac1bc
(v2.1.1.9229) unit tests
2025-03-28 11:40:09 +01:00
49da312506
(v2.1.1.9228) repo cleaning
2025-03-28 11:17:49 +01:00
4dc4398ad1
(v2.1.1.9217) allow + in amr selectors
2025-03-18 16:35:22 +01:00
8d8444c607
(v2.1.1.9216) PyPI access token
2025-03-17 08:56:27 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
9a9468fa84
(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests
2025-03-03 12:59:27 +01:00
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram
2025-02-26 13:27:20 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro
2025-02-23 11:18:08 +01:00
7accf6ff13
(v2.1.1.9127) unit tests
2025-01-27 10:46:43 +01:00
2e31ec19c3
(v2.1.1.9122) fix documentation
2024-12-20 10:52:44 +01:00
15fc72fc66
(v2.1.1.9121) support tidymodels
2024-12-19 20:17:15 +01:00
b1399259e7
(v2.1.1.9100) PyPI update
2024-10-17 15:22:19 +02:00
a9e753b1dc
(v2.1.1.9098) update Py vigettes
2024-10-17 11:52:01 +02:00
5c4d8fcd2a
(v2.1.1.9095) Python support
2024-10-15 17:12:55 +02:00
0736ac7a7e
(v2.1.1.9089) website update
2024-10-04 15:44:05 +02:00
50a9f8f0e0
(v2.1.1.9086) website update
2024-10-02 10:20:05 +02:00
91415462c0
(v2.1.1.9084) add vignette about Python
2024-09-30 22:04:44 +02:00
ac1c40d8bb
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
4e96a56b6a
(v2.1.1.9073) unit tests
2024-09-19 13:57:36 +02:00
7258a491b9
(v2.1.1.9068) fix for mo_url() and as.mo() for synonyms
2024-07-17 14:29:55 +02:00
