1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-27 08:46:12 +01:00
Commit Graph

231 Commits

Author SHA1 Message Date
f3276592b7 (v0.7.1.9064) bug-drug fix 2019-08-27 19:15:04 +02:00
93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
13d4fef801 (v0.7.1.9061) mo_property improvement 2019-08-26 10:03:37 +02:00
e46cb0399f (v0.7.1.9059) bug_drug_combinations 2019-08-25 22:53:22 +02:00
7c069145ac (v0.7.1.9058) as.mo() improvement 2019-08-20 11:40:54 +02:00
04d49a62af (v0.7.1.9057) get_column_abx() improvement 2019-08-15 17:09:27 +02:00
920212e815 (v0.7.1.9056) mo and ab subsetting 2019-08-14 14:57:06 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
5f2733349e (v0.7.1.9038) mo algorithm inprovements 2019-08-12 19:07:15 +02:00
c44c5e3913 (v0.7.1.9037) CI and global env fix 2019-08-12 15:34:49 +02:00
bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
6598c5615d (v0.7.1.9033) 5000 new fungi 2019-08-09 23:22:10 +02:00
6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
f67c739892 (v0.7.1.9029) unit test 2019-08-07 18:56:14 +02:00
bfa92eb166 (v0.7.1.9028) predict update 2019-08-07 15:58:32 +02:00
90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
14c47da656 (v0.7.1.9026) NAMESPACE fix 2019-08-06 15:57:51 +02:00
3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
85b62aaf8f (v0.7.1.9023) wrong percentage in as.mo() 2019-08-04 17:41:12 +02:00
643c5ed807 (v0.7.1.9022) CI fix for codecov 2019-08-04 11:33:56 +02:00
d6ab3896a1 (v0.7.1.9021) CI fix for resistance_predict 2019-08-04 10:48:41 +02:00
4f3ef53c78 (v0.7.1.9020) CI fix 2 2019-08-03 21:51:08 +02:00
a6606d334c (v0.7.1.9019) CI fix 2019-07-30 19:20:13 +02:00
2a62c3d62a (v0.7.1.9018) deps 2019-07-30 13:12:40 +02:00
ec0ca20dee (v0.7.1.9017) deps 2019-07-29 21:20:26 +02:00
b7e2d7b9b8 (v0.7.1.9016) deps 2019-07-29 17:34:57 +02:00
240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
9ac5a34b36 (v0.7.1.9014) MO codes update 2019-07-16 16:14:11 +02:00
c652c6913f (v0.7.1.9013) guess_mo_ab speed improvement 2019-07-11 13:39:18 +02:00
68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
b452de2fe4 (v0.7.1.9010) eucast informative text in verbose mode 2019-07-09 13:36:03 +02:00
b15d59cf03 (v0.7.1.9009) note for WHOCC 2019-07-09 11:22:46 +02:00
d9e257f8db (v0.7.1.9008) ab update 2019-07-04 19:08:18 +02:00
c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
4ff20af123 (v0.7.1.9006) new rsi calculations, atc class removal 2019-07-02 16:48:52 +02:00
156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
6013fbefae (v0.7.1.9003) website update 2019-06-23 21:35:17 +02:00
f2d7a19118 (v0.7.1.9002) website update 2019-06-23 17:44:36 +02:00
278244140c (v0.7.0.9015) vignette fix 2019-06-22 21:33:13 +02:00
b94638d53e (v0.7.0.9014) unit tests 2019-06-22 20:14:06 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
409397a337 (v0.7.0.9012) unit test 2019-06-18 19:28:26 +02:00
9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
980be2b22d (v0.7.0.9009) global note 2019-06-13 16:40:35 +02:00
254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
699e87ab4a (v0.7.0.9007) renamed notes fix 2019-06-12 16:08:20 +02:00
44ab53128e (v0.7.0.9006) ab algorithm fix for ATC codes 2019-06-11 15:31:32 +02:00
8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
f6c47c8c88 (v0.7.0.9004) pkgdown update 2019-06-09 08:57:54 +02:00
ec48f1d83b (v0.7.0.9003) scale fix 2019-06-08 23:50:06 +02:00
f50d3a5ba1 (v0.7.0.9002) scale fix 2019-06-08 15:00:28 +02:00
f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
04c75e8e36 (v0.7.0.9000) new dev version 2019-06-03 20:52:24 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
702da574c0 website update 2019-06-02 19:50:22 +02:00
bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
8de0495008 (v0.6.1.9052) website update 2019-06-01 21:28:18 +02:00
5608b27c7c (v0.6.1.9051) support staged install 2019-06-01 20:54:56 +02:00
2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
a665612cb8 (v0.6.1.9049) data creation fix 2019-05-31 21:20:16 +02:00
4bac768557 (v0.6.1.9048) data creation fox 2019-05-31 21:01:14 +02:00
0a6580b4eb (v0.6.1.9047) ggplot fix 2019-05-31 20:48:22 +02:00
4ed27c7e7a (v0.6.1.9046) ggplot fix 2019-05-31 20:25:57 +02:00
f03f71eced (v0.6.1.9045) age test fix 2019-05-31 14:40:15 +02:00
493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
1f8ee3ec3e (v0.6.1.9043) age doc fix 2019-05-30 08:51:38 +02:00
8b5e2b030b added boxplot for (grouped) freq() 2019-05-29 19:56:17 +02:00
62e6f41961 website update 2019-05-29 00:36:48 +02:00
27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
7e0e171512 website update 2019-05-23 19:39:07 +02:00
4bf6a06935 website update 2019-05-23 18:53:18 +02:00
3688fcaabf doc fix 2019-05-23 17:59:43 +02:00
bbf8b611e3 doc fix 2019-05-23 17:35:58 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
b0033dae1b website update 2019-05-17 20:22:04 +02:00
a925a5d2f8 add Disqus to website 2019-05-17 13:01:17 +02:00
c3ae6b7699 freq fix 2019-05-17 09:09:18 +02:00
4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
f6bf54b37d documentation fix 2019-05-13 20:16:51 +02:00
2ea0c93e44 documentation fix 2019-05-13 16:35:48 +02:00
cc403169c6 first isolate missing dates fix 2019-05-13 14:56:23 +02:00
0dc0715dc6 CI tests 2019-05-13 12:21:57 +02:00
38a4421450 CI tests 2019-05-13 10:10:16 +02:00
0444c4ed9d website update 2019-05-12 07:22:03 +02:00
fcc77164e9 mdro fix 2019-05-11 23:30:10 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
cffb7787d8 cfta streptococci 2019-04-09 10:34:40 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
429814c29b v0.6.0 2019-03-27 11:22:36 +01:00
8a1d384d9c ci fixes 2019-03-26 15:34:04 +01:00