dr. M.S. (Matthijs) Berends
09c4b04cd0
(v0.8.0.9007) Enterobacterales order
2019-10-30 23:02:50 +01:00
dr. M.S. (Matthijs) Berends
7ff2ad8188
(v0.8.0.9006) small typos
2019-10-27 00:31:59 +02:00
dr. M.S. (Matthijs) Berends
412077a6f2
(v0.8.0.9005) fix unit tests
2019-10-26 22:21:26 +02:00
dr. M.S. (Matthijs) Berends
d2e8249edd
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
2019-10-26 21:56:41 +02:00
dr. M.S. (Matthijs) Berends
c01dc8a5b7
(v0.8.0.9003) printing fix for AB columns
2019-10-23 15:44:11 +02:00
dr. M.S. (Matthijs) Berends
3e5ab53209
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
2019-10-23 14:48:25 +02:00
dr. M.S. (Matthijs) Berends
666126cd5e
(v0.8.0.9001) guideline text on as.rsi()
2019-10-21 14:12:28 +02:00
dr. M.S. (Matthijs) Berends
1b8e2366f7
(v0.8.0.9000) website update
2019-10-16 22:47:48 +02:00
dr. M.S. (Matthijs) Berends
ca13cc7633
v0.8.0
2019-10-15 22:19:34 +02:00
dr. M.S. (Matthijs) Berends
10e6b225e7
(v0.7.1.9107) v0.8.0
2019-10-15 14:35:23 +02:00
dr. M.S. (Matthijs) Berends
2c0f3534bf
(v0.7.1.9106) v0.8.0
2019-10-13 09:31:58 +02:00
dr. M.S. (Matthijs) Berends
1736fb62d6
(v0.7.1.9105) another try
2019-10-12 10:08:55 +02:00
dr. M.S. (Matthijs) Berends
2eb4a42f3d
(v0.7.1.9104) vignette fix
2019-10-12 09:15:27 +02:00
dr. M.S. (Matthijs) Berends
b2a08d056b
(v0.7.1.9103) add lintr to CI
2019-10-11 19:16:49 +02:00
dr. M.S. (Matthijs) Berends
00cdb498a0
(v0.7.1.9102) lintr
2019-10-11 17:21:02 +02:00
dr. M.S. (Matthijs) Berends
59af355a89
(v0.7.1.9101) NEWS update, fix authors
2019-10-09 10:52:19 +02:00
dr. M.S. (Matthijs) Berends
c8f6b97847
(v0.7.1.9100) bug_drug speed, MIC levels
2019-10-08 22:21:33 +02:00
dr. M.S. (Matthijs) Berends
683d226fd3
Update guess_ab_col.R
2019-10-08 08:02:19 +00:00
dr. M.S. (Matthijs) Berends
5dbff3e170
(v0.7.1.9098) mdro() unit test fix
2019-10-07 15:12:42 +02:00
dr. M.S. (Matthijs) Berends
f479dfce60
(v0.7.1.9097) mdro() examples fix
2019-10-07 14:57:27 +02:00
dr. M.S. (Matthijs) Berends
4e9c4c1b4e
(v0.7.1.9096) German guideline for mdro()
2019-10-07 14:32:06 +02:00
dr. M.S. (Matthijs) Berends
1e260d85c8
(v0.7.1.9095) get_column_abx() fix
2019-10-06 22:19:26 +02:00
dr. M.S. (Matthijs) Berends
3d5692219e
(v0.7.1.9094) get_column_abx() improvement
2019-10-06 21:44:08 +02:00
dr. M.S. (Matthijs) Berends
b6653a620a
(v0.7.1.9093) as.ab() fix
2019-10-06 21:07:38 +02:00
dr. M.S. (Matthijs) Berends
8bc4081b03
(v0.7.1.9092) as.ab() improvements
2019-10-04 15:36:12 +02:00
dr. M.S. (Matthijs) Berends
edb599ae0b
(v0.7.1.9091) percentage from clean pkg
2019-09-30 16:45:36 +02:00
dr. M.S. (Matthijs) Berends
b39e7feae6
(v0.7.1.9090) factor levels of mdr_tb
2019-09-26 21:58:06 +02:00
dr. M.S. (Matthijs) Berends
b9f01d686e
(v0.7.1.9089) eucast file update
2019-09-25 22:37:40 +02:00
dr. M.S. (Matthijs) Berends
99d0fe76dd
(v0.7.1.9088) bug_drug improvement
2019-09-25 15:43:22 +02:00
dr. M.S. (Matthijs) Berends
04cd0d25db
(v0.7.1.9087) small fix
2019-09-23 23:09:50 +02:00
dr. M.S. (Matthijs) Berends
38336d7408
(v0.7.1.9086) small fix
2019-09-23 23:00:18 +02:00
dr. M.S. (Matthijs) Berends
ad5f211a8f
(v0.7.1.9085) Salmonella fix
2019-09-23 21:24:37 +02:00
dr. M.S. (Matthijs) Berends
76dc948067
(v0.7.1.9084) CI fix
2019-09-23 20:55:54 +02:00
dr. M.S. (Matthijs) Berends
8ce252fbc5
(v0.7.1.9083) LIS code improvement
2019-09-23 17:32:05 +02:00
dr. M.S. (Matthijs) Berends
a8c6b8f9c4
(v0.7.1.9082) CI fix
2019-09-23 14:37:24 +02:00
dr. M.S. (Matthijs) Berends
64d9829030
(v0.7.1.9081) bug_drug fixes
2019-09-23 13:53:50 +02:00
dr. M.S. (Matthijs) Berends
66d405ff57
(v0.7.1.9080) new LIS codes
2019-09-22 17:19:59 +02:00
dr. M.S. (Matthijs) Berends
57b0bd92a0
(v0.7.1.9079) small fixes
2019-09-22 12:41:45 +02:00
dr. M.S. (Matthijs) Berends
46b61e9a70
(v0.7.1.9078) unit tests
2019-09-20 14:50:02 +02:00
dr. M.S. (Matthijs) Berends
40e6b3e8f6
(v0.7.1.9077) mo codes fix
2019-09-20 14:18:29 +02:00
dr. M.S. (Matthijs) Berends
3596adb295
(v0.7.1.9076) mo codes
2019-09-20 12:33:05 +02:00
dr. M.S. (Matthijs) Berends
e2aa4f996b
(v0.7.1.9075) new microorganism codes
2019-09-18 15:46:09 +02:00
dr. M.S. (Matthijs) Berends
f553a08a7b
(v0.7.1.9074) CI updates
2019-09-16 12:00:56 +02:00
dr. M.S. (Matthijs) Berends
398c5bdc4f
(v0.7.1.9073) as.mo() self-learning algorithm
2019-09-15 22:57:30 +02:00
dr. M.S. (Matthijs) Berends
cd178ee569
(v0.7.1.9072) key_antibiotics() for foreign systems
2019-09-12 15:08:53 +02:00
dr. M.S. (Matthijs) Berends
b5d2a08401
(v0.7.1.9071) p_symbol()
2019-09-03 09:47:39 +02:00
dr. M.S. (Matthijs) Berends
06b6266366
(v0.7.1.9070) na.rm for age(), age_groups()
2019-09-02 15:17:41 +02:00
dr. M.S. (Matthijs) Berends
c7be72f0ce
(v0.7.1.9069) documentation update
2019-09-01 13:16:57 +02:00
dr. M.S. (Matthijs) Berends
88ee1b7268
(v0.7.1.9068) gramstain to freq()
2019-08-30 14:50:56 +02:00
dr. M.S. (Matthijs) Berends
34a82d091e
(v0.7.1.9067) honor info
2019-08-28 17:12:48 +02:00
dr. M.S. (Matthijs) Berends
e2b78fa428
(v0.7.1.9066) bug-drug fix
2019-08-27 23:00:00 +02:00
dr. M.S. (Matthijs) Berends
248638ad91
(v0.7.1.9065) bug-drug fix
2019-08-27 22:41:09 +02:00
dr. M.S. (Matthijs) Berends
f3276592b7
(v0.7.1.9064) bug-drug fix
2019-08-27 19:15:04 +02:00
dr. M.S. (Matthijs) Berends
93be16484b
(v0.7.1.9063) septic_patients -> example_isolates
2019-08-27 16:45:42 +02:00
dr. M.S. (Matthijs) Berends
7a6fce4eb8
(v0.7.1.9062) mo/ab assignment improvements
2019-08-26 16:02:03 +02:00
dr. M.S. (Matthijs) Berends
13d4fef801
(v0.7.1.9061) mo_property improvement
2019-08-26 10:03:37 +02:00
dr. M.S. (Matthijs) Berends
e46cb0399f
(v0.7.1.9059) bug_drug_combinations
2019-08-25 22:53:22 +02:00
dr. M.S. (Matthijs) Berends
7c069145ac
(v0.7.1.9058) as.mo() improvement
2019-08-20 11:40:54 +02:00
dr. M.S. (Matthijs) Berends
04d49a62af
(v0.7.1.9057) get_column_abx() improvement
2019-08-15 17:09:27 +02:00
dr. M.S. (Matthijs) Berends
920212e815
(v0.7.1.9056) mo and ab subsetting
2019-08-14 14:57:06 +02:00
dr. M.S. (Matthijs) Berends
7108454ba5
(v0.7.1.9055) algorithm improvements
2019-08-13 16:15:08 +02:00
dr. M.S. (Matthijs) Berends
6c4822164c
Merge branch 'premaster'
2019-08-12 19:32:30 +02:00
dr. M.S. (Matthijs) Berends
5f2733349e
(v0.7.1.9038) mo algorithm inprovements
2019-08-12 19:07:15 +02:00
dr. M.S. (Matthijs) Berends
c44c5e3913
(v0.7.1.9037) CI and global env fix
2019-08-12 15:34:49 +02:00
dr. M.S. (Matthijs) Berends
bd252a2984
(v0.7.1.9036) preserve ab/mo classes in subsetting
2019-08-12 14:48:09 +02:00
dr. M.S. (Matthijs) Berends
990709c151
Merge branch 'premaster'
2019-08-11 22:23:18 +02:00
dr. M.S. (Matthijs) Berends
1d423cca89
(v0.7.1.9035) cephalosporins and unit tests
2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends
ce49a3bdd8
Merge branch 'premaster'
2019-08-09 23:55:44 +02:00
dr. M.S. (Matthijs) Berends
3f5828e74a
(v0.7.1.9034) mo.codes fix for Dracunculus spp.
2019-08-09 23:45:26 +02:00
dr. M.S. (Matthijs) Berends
6598c5615d
(v0.7.1.9033) 5000 new fungi
2019-08-09 23:22:10 +02:00
dr. M.S. (Matthijs) Berends
9fa7888015
Merge branch 'premaster'
2019-08-09 15:34:37 +02:00
dr. M.S. (Matthijs) Berends
6a349bf757
(v0.7.1.9032) eucast_rules() improvements
2019-08-09 14:28:46 +02:00
dr. M.S. (Matthijs) Berends
b790030c5f
Merge branch 'premaster'
2019-08-09 09:33:26 +02:00
dr. M.S. (Matthijs) Berends
1ce4b72dd2
(v0.7.1.9031) include_unknown for first_isolate()
2019-08-08 22:39:42 +02:00
dr. M.S. (Matthijs) Berends
857001f5f4
Merge branch 'premaster'
2019-08-08 17:01:36 +02:00
dr. M.S. (Matthijs) Berends
22a206ffd8
(v0.7.1.9030) eucast_rules() fix
2019-08-08 15:52:07 +02:00
dr. M.S. (Matthijs) Berends
43e81bda75
(v0.7.1.9029) unit test
...
Merge branch 'premaster'
# Conflicts:
# tests/testthat/test-resistance_predict.R
2019-08-07 19:22:46 +02:00
dr. M.S. (Matthijs) Berends
f67c739892
(v0.7.1.9029) unit test
2019-08-07 18:56:14 +02:00
dr. M.S. (Matthijs) Berends
e5cc09dbc0
Merge branch 'premaster'
2019-08-07 16:27:37 +02:00
dr. M.S. (Matthijs) Berends
bfa92eb166
(v0.7.1.9028) predict update
2019-08-07 15:58:32 +02:00
dr. M.S. (Matthijs) Berends
90c874025a
(v0.7.1.9027) tibble printing
2019-08-07 15:37:39 +02:00
dr. M.S. (Matthijs) Berends
3e9a263fc4
Merge branch 'master' of https://gitlab.com/msberends/AMR
2019-08-06 16:16:57 +02:00
dr. M.S. (Matthijs) Berends
01a44bf4f2
Merge from premaster
2019-08-06 16:15:24 +02:00
dr. M.S. (Matthijs) Berends
9c1deab414
git error
2019-08-06 16:12:45 +02:00
dr. M.S. (Matthijs) Berends
14c47da656
(v0.7.1.9026) NAMESPACE fix
2019-08-06 15:57:51 +02:00
dr. M.S. (Matthijs) Berends
96b334d7cc
website update
2019-08-06 14:46:30 +02:00
dr. M.S. (Matthijs) Berends
3a1f960f89
(v0.7.1.9024) eucast_rules() fix, new MOs
2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends
85b62aaf8f
(v0.7.1.9023) wrong percentage in as.mo()
2019-08-04 17:41:12 +02:00
dr. M.S. (Matthijs) Berends
643c5ed807
(v0.7.1.9022) CI fix for codecov
2019-08-04 11:33:56 +02:00
dr. M.S. (Matthijs) Berends
d6ab3896a1
(v0.7.1.9021) CI fix for resistance_predict
2019-08-04 10:48:41 +02:00
dr. M.S. (Matthijs) Berends
4f3ef53c78
(v0.7.1.9020) CI fix 2
2019-08-03 21:51:08 +02:00
dr. M.S. (Matthijs) Berends
a6606d334c
(v0.7.1.9019) CI fix
2019-07-30 19:20:13 +02:00
dr. M.S. (Matthijs) Berends
2a62c3d62a
(v0.7.1.9018) deps
2019-07-30 13:12:40 +02:00
dr. M.S. (Matthijs) Berends
ec0ca20dee
(v0.7.1.9017) deps
2019-07-29 21:20:26 +02:00
dr. M.S. (Matthijs) Berends
b7e2d7b9b8
(v0.7.1.9016) deps
2019-07-29 17:34:57 +02:00
dr. M.S. (Matthijs) Berends
240f03a672
(v0.7.1.9015) Remove freq()
2019-07-29 13:33:48 +02:00
dr. M.S. (Matthijs) Berends
9ac5a34b36
(v0.7.1.9014) MO codes update
2019-07-16 16:14:11 +02:00
dr. M.S. (Matthijs) Berends
68230d0712
(v0.7.1.90012) mo_shortname fix
2019-07-10 21:36:51 +02:00
dr. M.S. (Matthijs) Berends
26be33cc21
Update .gitlab-ci.yml
2018-10-28 13:24:02 +00:00
dr. M.S. (Matthijs) Berends
7f1013cd77
Update .gitlab-ci.yml
2018-10-28 10:20:26 +00:00
