P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-09-14 11:50:52 +02:00
Code Releases Activity
86 Commits 4 Branches 30 Tags
0a5898b17d31891c61e7c31698eb6505b803e30d
Commit Graph
46 Commits
This Branch
This Branch
All Branches
Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 0a5898b17d fix for printing tibbles, improve guess_bactid 2018-06-08 12:06:54 +02:00
dr. M.S. (Matthijs) Berends efdf5a3dc5 prevent dplyr:row_number warning 2018-05-31 14:19:25 +02:00
dr. M.S. (Matthijs) Berends 5593aee19e edit as.rsi algor. 2018-05-30 23:02:16 +02:00
dr. M.S. (Matthijs) Berends af524626b6 Merge branch 'master' of https://github.com/msberends/AMR 2018-05-14 11:54:25 +02:00
dr. M.S. (Matthijs) Berends 95f7c78fd6 edit vignette title 2018-05-14 11:54:08 +02:00
dr. M.S. (Matthijs) Berends f05e7178cb added vignette of freq 2018-05-09 11:44:46 +02:00
dr. M.S. (Matthijs) Berends 25b3346d9a edit methodology of rsi 2018-05-03 10:19:02 +02:00
dr. M.S. (Matthijs) Berends c0fc82c794 Added function n_rsi 2018-05-02 14:56:25 +02:00
dr. M.S. (Matthijs) Berends e5ae7b98ac update logo 2018-05-01 09:59:37 +02:00
dr. M.S. (Matthijs) Berends 6eaf594cb7 update data info 2018-05-01 09:57:50 +02:00
dr. M.S. (Matthijs) Berends be5d714639 update README 2018-05-01 09:43:47 +02:00
dr. M.S. (Matthijs) Berends 19ccc51f40 remove clipboard functions 2018-05-01 09:36:45 +02:00
dr. M.S. (Matthijs) Berends 6fa93fc286 fix clipboard check 2018-04-30 16:54:37 +02:00
dr. M.S. (Matthijs) Berends 8fe70d5652 Fix Latex PDF error 2018-04-30 16:24:11 +02:00
dr. M.S. (Matthijs) Berends 970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends 0b22ddef8e more unit tests 2018-04-20 13:45:34 +02:00
dr. M.S. (Matthijs) Berends 82fec5cc51 Try to support older R versions 2018-04-19 14:10:57 +02:00
dr. M.S. (Matthijs) Berends e7396b8f39 Try to support older R versions 2018-04-19 12:50:23 +02:00
dr. M.S. (Matthijs) Berends d79132b29f Try to support older R versions 2018-04-18 15:41:27 +02:00
dr. M.S. (Matthijs) Berends 4b5530ed64 Try to support older R versions 2018-04-18 15:19:00 +02:00
dr. M.S. (Matthijs) Berends a814d82b4b try to support older R versions 2018-04-18 14:50:16 +02:00
dr. M.S. (Matthijs) Berends 2509e2413d MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00
dr. M.S. (Matthijs) Berends 3165c50d06 more MOs 2018-04-03 16:07:32 +02:00
dr. M.S. (Matthijs) Berends 4a47e59e6f fortify code with more tests 2018-04-03 11:08:31 +02:00
dr. M.S. (Matthijs) Berends 1b3cc41c08 fix tests 2018-03-27 17:58:46 +02:00
dr. M.S. (Matthijs) Berends 6f7730dcaa add tests using testthat 2018-03-27 17:43:42 +02:00
dr. M.S. (Matthijs) Berends 53464ff1c8 - For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive 
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
 2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends e1e19af625 README update 2018-03-22 13:45:04 +01:00
dr. M.S. (Matthijs) Berends fe803f7279 use guess_bactid for GLIMS codes 2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends c765f424ab typo 2018-03-19 21:03:23 +01:00
dr. M.S. (Matthijs) Berends dd2517ecb7 - Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate` 
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
 2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends 502a44eb25 - Added new function guess_bactid to determine the ID of a microorganism based on genus/species 
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
 2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends 6c67c8f6c1 examples edit 2018-03-14 09:58:58 +01:00
dr. M.S. (Matthijs) Berends 46db3f7b13 import from graphics 2018-03-13 15:40:10 +01:00
dr. M.S. (Matthijs) Berends 53959d40c7 typo in examples 2018-03-13 14:40:52 +01:00
dr. M.S. (Matthijs) Berends 04fc3573ec add barplots 2018-03-13 14:34:10 +01:00
dr. M.S. (Matthijs) Berends e4b371d30a add MIC values 
add badges to readme
 2018-03-13 11:57:30 +01:00
dr. M.S. (Matthijs) Berends 34e70a65ed added septic_patients 2018-02-27 20:01:02 +01:00
dr. M.S. (Matthijs) Berends 98b2b99913 new atc codes 2018-02-26 16:06:49 +01:00
dr. M.S. (Matthijs) Berends 8a603876d2 misc 2018-02-26 15:53:09 +01:00
dr. M.S. (Matthijs) Berends 915d4db23b add rows to summary 2018-02-26 14:37:40 +01:00
dr. M.S. (Matthijs) Berends 6fa05fe33b first isolates 2018-02-26 14:06:31 +01:00
dr. M.S. (Matthijs) Berends d36a391747 export first_isolate 2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends be51a95448 rename columns 2018-02-26 10:53:54 +01:00
dr. M.S. (Matthijs) Berends 3f859210d5 new date for push test 2018-02-22 22:04:22 +01:00
dr. M.S. (Matthijs) Berends 11683b082e EUCAST man pages 2018-02-22 21:42:01 +01:00