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mirror of https://github.com/msberends/AMR.git synced 2025-04-23 00:24:04 +02:00

136 Commits

Author SHA1 Message Date
d31371613e
(v2.1.1.9237) clean-up 2025-04-13 09:59:40 +02:00
40d7a971c3
(v2.1.1.9236) documentation 2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website! 2025-04-08 15:54:30 +01:00
5f5b77bfaf
(v2.1.1.9231) Update EUCAST vignette 2025-03-29 18:03:31 +01:00
b972bbb96f
(v2.1.1.9230) deprecated resistance_predict(), data set folder name without space 2025-03-28 16:48:56 +01:00
7f1ae1f474
(v2.1.1.9203) unit tests 2025-03-15 13:25:23 +01:00
72f2e723fb
(v2.1.1.9200) new argument capped_mic_handling, add Search to website 2025-03-14 17:01:50 +01:00
58d7aa8790
(v2.1.1.9199) fix eucast 2025-03-14 13:43:22 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
ef02f4a7f2
(v2.1.1.9151) update readme 2025-02-15 20:53:12 +01:00
2561494e06
(v2.1.1.9133) update math formulae 2025-01-27 22:43:35 +01:00
9520977a10
(v2.1.1.9133) (v2.1.1.9132) unit test, final fixes 2025-01-27 22:09:16 +01:00
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper 2025-01-26 23:01:17 +01:00
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors' 2025-01-17 12:09:39 +01:00
15fc72fc66
(v2.1.1.9121) support tidymodels 2024-12-19 20:17:15 +01:00
c588902f4c (v2.1.1.9092) Fix website 2024-10-06 16:25:31 +02:00
Matthijs Berends
3dd3b6292a
Update _pkgdown.yml 2024-10-04 16:49:55 +02:00
325664f5aa (v2.1.1.9090) website error 2024-10-04 16:08:41 +02:00
0736ac7a7e (v2.1.1.9089) website update 2024-10-04 15:44:05 +02:00
91415462c0 (v2.1.1.9084) add vignette about Python 2024-09-30 22:04:44 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
28bf91cbf5 (v2.1.1.9077) fix logos 2024-09-19 14:40:19 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
a4dc37a4e4 (v2.1.1.9057) fix for missing breakpoints 2024-06-17 16:52:12 +02:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
94e9a4d99b update MIC implementation 2024-04-07 20:22:59 +02:00
46634bfcaa navbar colour 2024-02-25 16:48:04 +01:00
Matthijs Berends
8b43fed94d
Update _pkgdown.yml 2024-02-25 14:40:19 +01:00
8d077149fa new logo 2024-02-25 14:20:43 +01:00
c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
3829311dd3 random() fix 2023-07-08 21:00:49 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
4416394e10 website update 2023-02-26 21:26:58 +01:00
e890360986 website syntax update 2023-02-17 11:39:00 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
e4ea96cbf9 fix for R < 3.4 2022-12-30 12:57:27 +01:00
fe09e9252b custom mo update 2022-12-27 16:03:03 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
eed1c14b96 website update 2022-12-11 11:44:29 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
3deeedc4b6 website fix 2022-10-10 20:21:41 +02:00
bc44da0e38 website fix 2022-10-05 10:07:27 +02:00
def9fc0d75 fix website 2022-10-05 09:33:21 +02:00