dr. M.S. (Matthijs) Berends
03a3cb397b
clipboard update
2018-07-23 15:09:19 +02:00
dr. M.S. (Matthijs) Berends
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
dr. M.S. (Matthijs) Berends
9920ac8a5c
fix for keyab, more examples
2018-07-23 10:35:39 +02:00
dr. M.S. (Matthijs) Berends
ad662d7bab
new col names for `key_antibiotics`
2018-07-19 15:11:23 +02:00
dr. M.S. (Matthijs) Berends
0d64c166f0
keyab fixes
2018-07-17 19:51:09 +02:00
dr. M.S. (Matthijs) Berends
2a4d759fbc
check fails
2018-07-17 14:48:11 +02:00
dr. M.S. (Matthijs) Berends
5cb9c541f8
new algorithm key abs
2018-07-17 13:02:05 +02:00
dr. M.S. (Matthijs) Berends
a5a4354651
speed improvements
2018-07-17 10:32:26 +02:00
dr. M.S. (Matthijs) Berends
715a7630ca
support format.freq
2018-07-16 16:41:48 +02:00
dr. M.S. (Matthijs) Berends
6eaf33baf3
speed improvements
2018-07-15 22:56:41 +02:00
dr. M.S. (Matthijs) Berends
b6655f6454
Welcome C++!
2018-07-13 17:23:46 +02:00
dr. M.S. (Matthijs) Berends
a28289562a
remove print function, out of scope
2018-07-11 20:12:19 +02:00
dr. M.S. (Matthijs) Berends
e3e10c2e88
fix for macOS and older tidyr versions
2018-07-11 12:34:02 +02:00
dr. M.S. (Matthijs) Berends
f63414d519
new g.test, extra unit tests
2018-07-10 12:27:07 +02:00
dr. M.S. (Matthijs) Berends
fc30d3fb13
freq: support for table
2018-07-09 14:02:58 +02:00
dr. M.S. (Matthijs) Berends
14b990d769
kurtosis, skewness, start with ML
2018-07-08 22:14:55 +02:00
dr. M.S. (Matthijs) Berends
34ee0247ac
addins and small improvements to microorganisms dataset
2018-07-04 17:20:03 +02:00
dr. M.S. (Matthijs) Berends
10fce8382c
include IQR and MAD in freq
2018-07-03 11:30:40 +02:00
dr. M.S. (Matthijs) Berends
3d0d21f322
rename vector2ratio to ratio
2018-07-02 11:14:20 +02:00
dr. M.S. (Matthijs) Berends
2ca01e2d8d
remove rlang dependency
2018-07-01 22:23:34 +02:00
dr. M.S. (Matthijs) Berends
3527894b49
new g.test() and edited freq()
2018-07-01 21:40:37 +02:00
dr. M.S. (Matthijs) Berends
f7af8a81da
update man page
2018-06-29 09:06:47 +02:00
dr. M.S. (Matthijs) Berends
6ee713cec1
move tbl_parse_guess
2018-06-29 08:56:03 +02:00
dr. M.S. (Matthijs) Berends
649a8025aa
add clipboard functions again
2018-06-27 15:54:56 +02:00
dr. M.S. (Matthijs) Berends
a9bd5472d0
top_freq
2018-06-20 14:47:37 +02:00
dr. M.S. (Matthijs) Berends
4a027f3c34
extra unit tests, add row.names to freq
2018-06-19 15:20:14 +02:00
dr. M.S. (Matthijs) Berends
bdc860e29c
atc_groups
2018-06-19 10:05:38 +02:00
dr. M.S. (Matthijs) Berends
0a5898b17d
fix for printing tibbles, improve guess_bactid
2018-06-08 12:06:54 +02:00
dr. M.S. (Matthijs) Berends
efdf5a3dc5
prevent dplyr:row_number warning
2018-05-31 14:19:25 +02:00
7a6d5fb6b7
rsi/mic fix
2018-05-31 09:02:49 +02:00
dr. M.S. (Matthijs) Berends
5593aee19e
edit as.rsi algor.
2018-05-30 23:02:16 +02:00
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
0d80647d41
fix SI and IR
2018-05-16 11:19:45 +02:00
dr. M.S. (Matthijs) Berends
f05e7178cb
added vignette of freq
2018-05-09 11:44:46 +02:00
dr. M.S. (Matthijs) Berends
25b3346d9a
edit methodology of rsi
2018-05-03 10:19:02 +02:00
dr. M.S. (Matthijs) Berends
c0fc82c794
Added function `n_rsi`
2018-05-02 14:56:25 +02:00
dr. M.S. (Matthijs) Berends
6eaf594cb7
update data info
2018-05-01 09:57:50 +02:00
dr. M.S. (Matthijs) Berends
19ccc51f40
remove clipboard functions
2018-05-01 09:36:45 +02:00
dr. M.S. (Matthijs) Berends
6fa93fc286
fix clipboard check
2018-04-30 16:54:37 +02:00
dr. M.S. (Matthijs) Berends
8fe70d5652
Fix Latex PDF error
2018-04-30 16:24:11 +02:00
dr. M.S. (Matthijs) Berends
970e3ed7f1
EUCAST rules for MDRO
2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends
0b22ddef8e
more unit tests
2018-04-20 13:45:34 +02:00
dr. M.S. (Matthijs) Berends
82fec5cc51
Try to support older R versions
2018-04-19 14:10:57 +02:00
dr. M.S. (Matthijs) Berends
e7396b8f39
Try to support older R versions
2018-04-19 12:50:23 +02:00
dr. M.S. (Matthijs) Berends
d79132b29f
Try to support older R versions
2018-04-18 15:41:27 +02:00
dr. M.S. (Matthijs) Berends
4b5530ed64
Try to support older R versions
2018-04-18 15:19:00 +02:00
dr. M.S. (Matthijs) Berends
a814d82b4b
try to support older R versions
2018-04-18 14:50:16 +02:00
dr. M.S. (Matthijs) Berends
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
dr. M.S. (Matthijs) Berends
3165c50d06
more MOs
2018-04-03 16:07:32 +02:00
dr. M.S. (Matthijs) Berends
07bdd61241
update dependencies
2018-04-02 16:05:09 +02:00
dr. M.S. (Matthijs) Berends
c182a9673d
fix clipboard on linux
2018-04-02 11:11:21 +02:00
b7f29aa748
Update first_isolates.R
2018-03-29 15:15:31 +02:00
f1dbed6fcc
Update clipboard.R
2018-03-29 14:56:40 +02:00
136272cb71
Update clipboard.R
2018-03-29 14:16:42 +02:00
fd04df5f9d
Update clipboard.R
2018-03-29 13:23:02 +02:00
2f4823f7a7
Update clipboard.R
2018-03-29 13:10:55 +02:00
dr. M.S. (Matthijs) Berends
6f7730dcaa
add tests using testthat
2018-03-27 17:43:42 +02:00
9637b43357
Remove Windows only function
2018-03-23 14:59:02 +01:00
1b3daebc84
Remove Windows only function
2018-03-23 14:52:56 +01:00
dr. M.S. (Matthijs) Berends
53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends
fe803f7279
use guess_bactid for GLIMS codes
2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends
c765f424ab
typo
2018-03-19 21:03:23 +01:00
dr. M.S. (Matthijs) Berends
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be `points` or `keyantibiotics, see `?first_isolate`
...
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends
502a44eb25
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species
...
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends
6c67c8f6c1
examples edit
2018-03-14 09:58:58 +01:00
dr. M.S. (Matthijs) Berends
46db3f7b13
import from graphics
2018-03-13 15:40:10 +01:00
dr. M.S. (Matthijs) Berends
53959d40c7
typo in examples
2018-03-13 14:40:52 +01:00
dr. M.S. (Matthijs) Berends
04fc3573ec
add barplots
2018-03-13 14:34:10 +01:00
dr. M.S. (Matthijs) Berends
e4b371d30a
add MIC values
...
add badges to readme
2018-03-13 11:57:30 +01:00
ceefluz
4ea0333349
Minor text changes for DDD definition
2018-03-13 11:48:30 +01:00
dr. M.S. (Matthijs) Berends
34e70a65ed
added septic_patients
2018-02-27 20:01:02 +01:00
dr. M.S. (Matthijs) Berends
8a603876d2
misc
2018-02-26 15:53:09 +01:00
dr. M.S. (Matthijs) Berends
915d4db23b
add rows to summary
2018-02-26 14:37:40 +01:00
dr. M.S. (Matthijs) Berends
6fa05fe33b
first isolates
2018-02-26 14:06:31 +01:00
dr. M.S. (Matthijs) Berends
d36a391747
export first_isolate
2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends
be51a95448
rename columns
2018-02-26 10:53:54 +01:00
dr. M.S. (Matthijs) Berends
11683b082e
EUCAST man pages
2018-02-22 21:42:01 +01:00
dr. M.S. (Matthijs) Berends
10380bcfae
add NEWS
2018-02-22 21:37:10 +01:00
dr. M.S. (Matthijs) Berends
d8da8daf9a
First CRAN submission edits
2018-02-22 20:48:48 +01:00
dr. M.S. (Matthijs) Berends
ab0503f8b8
abname, logo
2018-02-21 12:10:00 +01:00
dr. M.S. (Matthijs) Berends
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
MS Berends
uscloud
