Claude
0cc154257a
Qualify all {.help} tags with AMR:: and convert backtick ?func references
...
- Add AMR:: namespace prefix and trailing () to all {.help} cli markup
so they render as clickable help links (e.g. {.help AMR::as.sir}())
- Convert `?funcname` backtick-quoted help references to {.help AMR::funcname}()
in aa_helper_functions.R, custom_eucast_rules.R, interpretive_rules.R,
key_antimicrobials.R, mo.R, plotting.R, resistance_predict.R, and sir.R
- Skipped `?proportion` in sir_calc.R as 'proportion' is not exported
https://claude.ai/code/session_01XHWLohiSTdZvCutwD7ag2b
2026-03-18 20:06:52 +00:00
ba4c159154
(v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
...
Fixes #246
Fixes #254
Fixes #255
Fixes #256
2026-02-08 23:15:40 +01:00
0b24967b23
(v3.0.1.9001) fix antibiogram
2025-09-30 10:54:07 +02:00
adee419f1c
v3.0.1
2025-09-20 17:14:07 +01:00
33fb1849eb
(v3.0.0.9036) Prepare for v3.0.1
2025-09-19 12:23:59 +01:00
e8c99f2775
(v3.0.0.9031) fix for ggplot2
2025-09-12 16:52:59 +02:00
2f866985c9
(v3.0.0.9016) fix for plotting
2025-07-23 22:05:20 +02:00
6cb724a208
(v3.0.0.9015) plotting fix
2025-07-19 14:06:36 +02:00
49274f010b
(v3.0.0.9014) fix plot colours
2025-07-18 15:57:48 +02:00
d94bdd2c6a
(v3.0.0.9008) fix ggplot_sir(), support lighter green for SDD
2025-07-17 17:05:41 +02:00
38cebc1541
(v2.1.1.9279) fix documentation, add foreign S3 exports to functions
2025-05-16 16:55:29 +02:00
b8f0f64287
(v2.1.1.9269) Support 7 new languages
2025-05-02 19:25:19 +02:00
abee2a954e
(v2.1.1.9252) fix MIC for >= and <=
2025-04-25 10:19:40 +02:00
ea443f7483
(v2.1.1.9247) CLSI/EUCAST 2025!
2025-04-20 12:55:31 +02:00
579025f678
(v2.1.1.9241) fix sir
2025-04-18 13:25:59 +02:00
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram
2025-02-26 13:27:20 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro
2025-02-23 11:18:08 +01:00
226d10f546
(v2.1.1.9154) documentation fix
2025-02-22 22:07:56 +01:00
abb5602532
(v2.1.1.9153) mic plot fix
2025-02-22 21:26:38 +01:00
671d657fd8
(v2.1.1.9152) MIC plot fix
2025-02-18 08:07:02 +01:00
883fbe7cfe
(v2.1.1.9149) doc fix
2025-02-15 12:46:48 +01:00
9d636983ac
(v2.1.1.9148) scale fix, antibiogram fix
2025-02-15 12:38:29 +01:00
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00
bd2887bcd4
(v2.1.1.9146) new scale_*_sir() functions
2025-02-13 19:47:57 +01:00
07757c933c
(v2.1.1.9144) new MIC scales and fix for rescale_mic()
2025-02-11 08:48:37 +01:00
f03933940c
(v2.1.1.9131) implement testthat
2025-01-27 21:43:10 +01:00
2e31ec19c3
(v2.1.1.9122) fix documentation
2024-12-20 10:52:44 +01:00
d7de1bc33d
(v2.1.1.9118) move ggplot2 plotting functions to general 'plotting' man page
2024-12-14 19:41:15 +01:00
a558f4c121
(v2.1.1.9080) fix rescale_mic() for an outside MIC range
2024-09-24 22:39:40 +02:00
