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Commit Graph

605 Commits

Author SHA1 Message Date
152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
641b88c814 website update 2022-03-27 09:37:55 +02:00
7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
0fb9a1b194 prerelease 1.8.1 2022-03-14 16:43:15 +01:00
45e9546538 prerelease 1.8.1
Merge branch 'development' of https://github.com/msberends/AMR into development

# Conflicts:
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#	docs/articles/AMR_files/figure-html/disk_plots-1.png
#	docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png
#	docs/articles/AMR_files/figure-html/mic_plots-1.png
#	docs/articles/AMR_files/figure-html/mic_plots-2.png
#	docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png
#	docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png
#	docs/articles/AMR_files/figure-html/plot 1-1.png
#	docs/articles/AMR_files/figure-html/plot 3-1.png
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#	docs/articles/AMR_files/figure-html/plot 5-1.png
#	docs/articles/EUCAST.html
#	docs/articles/MDR.html
#	docs/articles/PCA.html
#	docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png
#	docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png
#	docs/articles/SPSS.html
#	docs/articles/WHONET.html
#	docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png
#	docs/articles/benchmarks.html
#	docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png
#	docs/articles/datasets.html
#	docs/articles/resistance_predict.html
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#	docs/articles/welcome_to_AMR.html
#	docs/news/index.html
#	docs/pkgdown.yml
#	docs/reference/AMR-deprecated.html
#	docs/reference/AMR.html
#	docs/reference/WHOCC.html
#	docs/reference/WHONET.html
#	docs/reference/antibiotics.html
#	docs/reference/catalogue_of_life.html
#	docs/reference/catalogue_of_life_version.html
#	docs/reference/dosage.html
#	docs/reference/example_isolates.html
#	docs/reference/example_isolates_unclean.html
#	docs/reference/g.test.html
#	docs/reference/intrinsic_resistant.html
#	docs/reference/microorganisms.codes.html
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#	docs/reference/rsi_translation.html
2022-03-14 16:37:37 +01:00
1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
8c9feea087 website update 2022-03-12 19:53:29 +01:00
ad82bb4ce0 (v1.8.0.9004) MIC printing in tibbles 2022-03-03 21:11:02 +01:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
5eef01165e (v1.7.1.9072) as.rsi() fix for UTIs 2021-12-14 12:33:29 +01:00
0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
5b5f70a103 (v1.7.1.9066) mdro EUCAST v3.3 2021-12-11 15:29:30 +01:00
e0a2634f14 (v1.7.1.9065) unit tests 2021-12-11 15:13:44 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
1fa3fc6af2 (v1.7.1.9061) bugfix set_ab_names 2021-12-05 23:21:59 +01:00
75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
b747036deb (v1.7.1.9059) bugfix set_ab_names 2021-12-05 22:59:06 +01:00
7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
3abe61fd61 (v1.7.1.9057) NAs in get_episode() 2021-12-02 13:32:14 +01:00
5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
d1b16ce641 (v1.7.1.9048) unit tests 2021-10-04 10:22:10 +02:00
9b97233be2 (v1.7.1.9046) unit tests 2021-10-03 13:50:52 +02:00
b0c84cce9c (v1.7.1.9045) unit tests 2021-09-29 20:24:02 +02:00
557ce74fd7 (v1.7.1.9044) unit tests 2021-09-29 20:13:52 +02:00
45f597cac5 (v1.7.1.9043) unit tests 2021-09-29 20:10:44 +02:00
e8d3ce05d7 (v1.7.1.9041) new GH actions, branches rename 2021-09-29 16:36:03 +02:00
93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
5f433d6e5c (v1.7.1.9039) reinitiate all units tests 2021-09-03 13:08:36 +02:00
81a1a432bd (v1.7.1.9038) dplyr grouping fix on windows? 2021-09-01 16:52:55 +02:00