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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 06:46:12 +01:00
Commit Graph

85 Commits

Author SHA1 Message Date
5c4d8fcd2a (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
127892430d (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
fc269e667d unit test fix 2024-05-20 18:58:35 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
049baf0a71 fix for antibiograms on R < 3.5 2023-02-24 09:43:10 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
ba255ddb00 website 2023-02-18 11:57:17 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
aa48c6bf53 pm fixes 2023-02-08 16:51:41 +01:00
822e9de82c pm update, unit test fix? 2023-02-08 13:48:06 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
a44283f998 (v1.7.1.9024) unit tests 2021-08-17 14:34:11 +02:00
b228eb1536 (v1.7.1.9016) only_treatable ab selectors 2021-07-08 22:23:28 +02:00
ad10693a1a (v1.7.1.9014) rep() for S3 classes 2021-07-06 16:35:14 +02:00
5b5741f681 (v1.7.1.9011) subsetting taxonomy fix 2021-07-04 15:26:50 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
286eaa9699 (v1.5.0.9010) MDRO vignette update, get_episode for < day 2021-01-24 14:48:56 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
7ebc534ccd (v1.5.0.9003) verbose output of mdro() 2021-01-15 22:44:52 +01:00
526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
deefce9520 (v1.4.0.9021) more robust class setting 2020-11-16 16:57:55 +01:00