 dr. M.S. (Matthijs) Berends
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19703eb5d3
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(v1.1.0.9012) lose dependencies
|
2020-05-19 12:08:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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bf0402a653
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(v1.1.0.9009) lose dependencies
|
2020-05-18 10:30:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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df2456b91f
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(v1.1.0.9005) lose dependencies
|
2020-05-16 20:08:21 +02:00 |
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dr. M.S. (Matthijs) Berends
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7f3da74b17
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(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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9fce546901
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(v1.1.0.9003) CI fix
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2020-05-01 09:14:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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b040185269
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(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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dr. M.S. (Matthijs) Berends
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4be54d608c
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(v1.0.1.9008) RIVM abbreviations for drugs
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2020-04-14 20:38:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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219cff403f
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(v1.0.1.9004) Support dplyr 1.0.0
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2020-03-14 14:05:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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77656a676c
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(v1.0.1.9002) PCA unit tests
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2020-03-08 11:18:59 +01:00 |
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dr. M.S. (Matthijs) Berends
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9fc858f208
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(v1.0.1.9001) PCA unit tests
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2020-03-08 09:12:11 +01:00 |
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dr. M.S. (Matthijs) Berends
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0595af2801
|
(v1.0.0.9006) fix WARNING
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2020-02-21 21:26:58 +01:00 |
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dr. M.S. (Matthijs) Berends
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ea32e9916a
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(v1.0.0.9005) info printing only in interactive mode
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2020-02-21 21:13:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
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2020-02-21 16:05:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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bb3728f023
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(v1.0.0.9003) prepare for short update
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2020-02-21 13:13:34 +01:00 |
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dr. M.S. (Matthijs) Berends
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c6184a0fb8
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(v0.9.0.9029) add uti to as.rsi()
|
2020-02-20 13:19:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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c7a93af3d0
|
(v0.9.0.9024) global vars fix
|
2020-02-14 20:03:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
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2020-02-14 19:54:13 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f152ab9a48
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(v0.9.0.9018) Remove mo_history
|
2020-01-31 23:27:38 +01:00 |
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dr. M.S. (Matthijs) Berends
|
a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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449d9bde35
|
(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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dr. M.S. (Matthijs) Berends
|
ba3ce77f02
|
(v0.9.0.9005) as.mo for G. species
|
2019-12-21 10:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
|
9feef53bde
|
(v0.8.0.9037) complete documentation rewrite
|
2019-11-28 23:00:37 +01:00 |
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dr. M.S. (Matthijs) Berends
|
c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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dr. M.S. (Matthijs) Berends
|
267320f15f
|
(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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dr. M.S. (Matthijs) Berends
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59ededa8dc
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(v0.8.0.9027) adding susceptibility() and resistance()
|
2019-11-10 12:16:56 +01:00 |
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dr. M.S. (Matthijs) Berends
|
1c4f91ab74
|
ci fix
|
2019-11-06 16:08:58 +01:00 |
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dr. M.S. (Matthijs) Berends
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5345d2759a
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(v0.8.0.9012) mdro improvement
|
2019-11-05 11:28:52 +01:00 |
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dr. M.S. (Matthijs) Berends
|
29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
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dr. M.S. (Matthijs) Berends
|
09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
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dr. M.S. (Matthijs) Berends
|
412077a6f2
|
(v0.8.0.9005) fix unit tests
|
2019-10-26 22:21:26 +02:00 |
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dr. M.S. (Matthijs) Berends
|
d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
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dr. M.S. (Matthijs) Berends
|
3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
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dr. M.S. (Matthijs) Berends
|
10e6b225e7
|
(v0.7.1.9107) v0.8.0
|
2019-10-15 14:35:23 +02:00 |
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dr. M.S. (Matthijs) Berends
|
00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5dbff3e170
|
(v0.7.1.9098) mdro() unit test fix
|
2019-10-07 15:12:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4e9c4c1b4e
|
(v0.7.1.9096) German guideline for mdro()
|
2019-10-07 14:32:06 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b6653a620a
|
(v0.7.1.9093) as.ab() fix
|
2019-10-06 21:07:38 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
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dr. M.S. (Matthijs) Berends
|
76dc948067
|
(v0.7.1.9084) CI fix
|
2019-09-23 20:55:54 +02:00 |
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dr. M.S. (Matthijs) Berends
|
64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
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dr. M.S. (Matthijs) Berends
|
3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
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dr. M.S. (Matthijs) Berends
|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
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dr. M.S. (Matthijs) Berends
|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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dr. M.S. (Matthijs) Berends
|
cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b5d2a08401
|
(v0.7.1.9071) p_symbol()
|
2019-09-03 09:47:39 +02:00 |
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dr. M.S. (Matthijs) Berends
|
06b6266366
|
(v0.7.1.9070) na.rm for age(), age_groups()
|
2019-09-02 15:17:41 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c7be72f0ce
|
(v0.7.1.9069) documentation update
|
2019-09-01 13:16:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
88ee1b7268
|
(v0.7.1.9068) gramstain to freq()
|
2019-08-30 14:50:56 +02:00 |
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dr. M.S. (Matthijs) Berends
|
e2b78fa428
|
(v0.7.1.9066) bug-drug fix
|
2019-08-27 23:00:00 +02:00 |
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dr. M.S. (Matthijs) Berends
|
93be16484b
|
(v0.7.1.9063) septic_patients -> example_isolates
|
2019-08-27 16:45:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
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dr. M.S. (Matthijs) Berends
|
e46cb0399f
|
(v0.7.1.9059) bug_drug_combinations
|
2019-08-25 22:53:22 +02:00 |
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dr. M.S. (Matthijs) Berends
|
04d49a62af
|
(v0.7.1.9057) get_column_abx() improvement
|
2019-08-15 17:09:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7108454ba5
|
(v0.7.1.9055) algorithm improvements
|
2019-08-13 16:15:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6c4822164c
|
Merge branch 'premaster'
|
2019-08-12 19:32:30 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5f2733349e
|
(v0.7.1.9038) mo algorithm inprovements
|
2019-08-12 19:07:15 +02:00 |
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dr. M.S. (Matthijs) Berends
|
bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
|
2019-08-12 14:48:09 +02:00 |
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dr. M.S. (Matthijs) Berends
|
990709c151
|
Merge branch 'premaster'
|
2019-08-11 22:23:18 +02:00 |
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dr. M.S. (Matthijs) Berends
|
1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b790030c5f
|
Merge branch 'premaster'
|
2019-08-09 09:33:26 +02:00 |
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dr. M.S. (Matthijs) Berends
|
1ce4b72dd2
|
(v0.7.1.9031) include_unknown for first_isolate()
|
2019-08-08 22:39:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
43e81bda75
|
(v0.7.1.9029) unit test
Merge branch 'premaster'
# Conflicts:
# tests/testthat/test-resistance_predict.R
|
2019-08-07 19:22:46 +02:00 |
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dr. M.S. (Matthijs) Berends
|
f67c739892
|
(v0.7.1.9029) unit test
|
2019-08-07 18:56:14 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e5cc09dbc0
|
Merge branch 'premaster'
|
2019-08-07 16:27:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3e9a263fc4
|
Merge branch 'master' of https://gitlab.com/msberends/AMR
|
2019-08-06 16:16:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
3a1f960f89
|
(v0.7.1.9024) eucast_rules() fix, new MOs
|
2019-08-06 14:39:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f404db85d4
|
Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
|
2019-08-04 13:32:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d6ab3896a1
|
(v0.7.1.9021) CI fix for resistance_predict
|
2019-08-04 10:48:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b730920bb3
|
Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
|
2019-07-29 23:48:34 +02:00 |
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dr. M.S. (Matthijs) Berends
|
240f03a672
|
(v0.7.1.9015) Remove freq()
|
2019-07-29 13:33:48 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7bd29cb8ef
|
codecov update
|
2019-07-11 16:08:56 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
68230d0712
|
(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a56a87c7db
|
quickfix
|
2019-07-09 20:26:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c57ad26c5b
|
(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
|
2019-07-02 16:48:52 +02:00 |
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dr. M.S. (Matthijs) Berends
|
156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b94638d53e
|
(v0.7.0.9014) unit tests
|
2019-06-22 20:14:06 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
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dr. M.S. (Matthijs) Berends
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
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dr. M.S. (Matthijs) Berends
|
254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ec48f1d83b
|
(v0.7.0.9003) scale fix
|
2019-06-08 23:50:06 +02:00 |
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dr. M.S. (Matthijs) Berends
|
f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
270aa0dd33
|
v0.7.0
|
2019-06-03 17:45:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5608b27c7c
|
(v0.6.1.9051) support staged install
|
2019-06-01 20:54:56 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4bac768557
|
(v0.6.1.9048) data creation fox
|
2019-05-31 21:01:14 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0a6580b4eb
|
(v0.6.1.9047) ggplot fix
|
2019-05-31 20:48:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f03f71eced
|
(v0.6.1.9045) age test fix
|
2019-05-31 14:40:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
|
2019-05-31 14:25:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8b5e2b030b
|
added boxplot for (grouped) freq()
|
2019-05-29 19:56:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
27380fa021
|
fixes for microorganisms.codes
|
2019-05-28 16:50:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
60983a1640
|
added mdr_tb()
|
2019-05-23 16:58:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
07d26cd485
|
faster determination of abx
|
2019-05-20 19:12:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |