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mirror of https://github.com/msberends/AMR.git synced 2025-04-19 21:53:57 +02:00

153 Commits

Author SHA1 Message Date
36fd99e1f4
(v2.1.1.9235) New website! 2025-04-08 15:54:30 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences 2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup 2025-03-31 10:51:31 +02:00
49da312506
(v2.1.1.9228) repo cleaning 2025-03-28 11:17:49 +01:00
bb110646db
(v2.1.1.9223) allow + ab 2025-03-20 22:56:32 +01:00
79f56ad8a4
(v2.1.1.9220) unit test 2025-03-19 16:13:43 +01:00
4dc4398ad1
(v2.1.1.9217) allow + in amr selectors 2025-03-18 16:35:22 +01:00
72f2e723fb
(v2.1.1.9200) new argument capped_mic_handling, add Search to website 2025-03-14 17:01:50 +01:00
e134e01418
(v2.1.1.9198) support eucast expert rules 14 and 13.1 2025-03-14 10:10:35 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
22e66741cc
(v2.1.1.9160) cleanup 2025-02-26 20:28:33 +01:00
0c3ea4b538
(v2.1.1.9159) new approach as.ab() 2025-02-26 19:23:54 +01:00
122bca0f95
(v2.1.1.9158) updated as.ab 2025-02-26 13:32:16 +01:00
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram 2025-02-26 13:27:20 +01:00
22afd918e6
(v2.1.1.9136) console colours, updated Suggests, added as.ab() improvement 2025-01-31 16:01:52 +01:00
08ddbaa930
(v2.1.1.9123) add EFF code to antibiotics data set 2025-01-15 16:14:09 +01:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
d214f74e25 allow column name for ab in as.sir() 2024-05-20 21:29:13 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
b68f47d985 improved algorithm of as.ab() 2024-05-12 16:24:44 +02:00
7f18e66c4e unit test fix 2024-04-24 11:42:43 +02:00
25089e811e correct for high-level abx 2024-04-24 09:50:32 +02:00
bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
ea2a4652e9 mouse-hover fixes 2023-07-12 15:27:43 +01:00
66eeeb4b88 cleanup 2023-07-11 14:29:40 +02:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
c2cfc5ef84 fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
d20caae54b cleanup 2022-10-31 13:25:41 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00