1
0
mirror of https://github.com/msberends/AMR.git synced 2025-04-19 07:53:54 +02:00

123 Commits

Author SHA1 Message Date
36fd99e1f4
(v2.1.1.9235) New website! 2025-04-08 15:54:30 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences 2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup 2025-03-31 10:51:31 +02:00
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex 2025-03-26 17:19:17 +01:00
43660f2b18
(v2.1.1.9221) allow combined numeric MIC values 2025-03-20 21:47:45 +01:00
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET 2025-03-12 16:24:38 +01:00
9a9468fa84
(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests 2025-03-03 12:59:27 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro 2025-02-23 11:18:08 +01:00
abb5602532
(v2.1.1.9153) mic plot fix 2025-02-22 21:26:38 +01:00
671d657fd8
(v2.1.1.9152) MIC plot fix 2025-02-18 08:07:02 +01:00
07757c933c
(v2.1.1.9144) new MIC scales and fix for rescale_mic() 2025-02-11 08:48:37 +01:00
Edwin van Leeuwen
1697ad37ce
feat: Remove leading equal signs before mic levels (#181) 2025-01-16 11:57:25 +01:00
a558f4c121 (v2.1.1.9080) fix rescale_mic() for an outside MIC range 2024-09-24 22:39:40 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
af74e1d4f2 (v2.1.1.9041) antibiotics update 2024-06-08 17:35:25 +02:00
d4490c7f25 fix sorting of MICs, MIC autoplot titles 2024-05-30 15:50:17 +02:00
c3ce1b551d rename limit_mic_range() to rescale_mic() 2024-05-24 15:07:41 +02:00
2899b3c840 new mo_group_members() 2024-04-19 10:18:21 +02:00
94e9a4d99b update MIC implementation 2024-04-07 20:22:59 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
83e92fd88c docu fix 2023-12-04 08:19:02 +01:00
c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
6f417d0ef2 add scale_x_mic() 2023-12-03 01:06:00 +01:00
4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
7dc96794be fix rounding MICs on R-devel 2023-07-20 08:24:27 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
ba51c2d92f add column to as.mic() and as.disk() warnings 2022-11-28 19:39:52 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
7226b70c3d update languages 2022-08-20 20:17:14 +02:00
70a07bad39 (v1.8.1.9010) random when pkg not loaded 2022-05-16 12:52:50 +02:00
d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00