dr. M.S. (Matthijs) Berends
fa519105eb
lintr fix
2025-02-27 16:44:56 +01:00
dr. M.S. (Matthijs) Berends
07efc292bc
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
dr. M.S. (Matthijs) Berends
1a43882583
ab fix
2025-02-26 21:34:07 +01:00
dr. M.S. (Matthijs) Berends
22e66741cc
(v2.1.1.9160) cleanup
2025-02-26 20:28:33 +01:00
dr. M.S. (Matthijs) Berends
0c3ea4b538
(v2.1.1.9159) new approach as.ab()
2025-02-26 19:23:54 +01:00
dr. M.S. (Matthijs) Berends
122bca0f95
(v2.1.1.9158) updated as.ab
2025-02-26 13:32:16 +01:00
dr. M.S. (Matthijs) Berends
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram
2025-02-26 13:27:20 +01:00
dr. M.S. (Matthijs) Berends
b10989f431
(v2.1.1.9156) fix for knitr in WISCA
2025-02-23 19:18:42 +01:00
dr. M.S. (Matthijs) Berends
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro
2025-02-23 11:18:08 +01:00
dr. M.S. (Matthijs) Berends
226d10f546
(v2.1.1.9154) documentation fix
2025-02-22 22:07:56 +01:00
dr. M.S. (Matthijs) Berends
abb5602532
(v2.1.1.9153) mic plot fix
2025-02-22 21:26:38 +01:00
dr. M.S. (Matthijs) Berends
671d657fd8
(v2.1.1.9152) MIC plot fix
2025-02-18 08:07:02 +01:00
dr. M.S. (Matthijs) Berends
ef02f4a7f2
(v2.1.1.9151) update readme
2025-02-15 20:53:12 +01:00
dr. M.S. (Matthijs) Berends
9650545d6e
(v2.1.1.9150) unit tests
2025-02-15 13:40:51 +01:00
dr. M.S. (Matthijs) Berends
883fbe7cfe
(v2.1.1.9149) doc fix
2025-02-15 12:46:48 +01:00
dr. M.S. (Matthijs) Berends
9d636983ac
(v2.1.1.9148) scale fix, antibiogram fix
2025-02-15 12:38:29 +01:00
dr. M.S. (Matthijs) Berends
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00
dr. M.S. (Matthijs) Berends
bd2887bcd4
(v2.1.1.9146) new scale_*_sir() functions
2025-02-13 19:47:57 +01:00
dr. M.S. (Matthijs) Berends
07757c933c
(v2.1.1.9144) new MIC scales and fix for rescale_mic()
2025-02-11 08:48:37 +01:00
dr. M.S. (Matthijs) Berends
2171f05951
(v2.1.1.9143) unit tests
2025-02-07 19:18:55 +01:00
dr. M.S. (Matthijs) Berends
cc2bb151ab
(v2.1.1.9142) unit test fix
2025-02-07 19:03:02 +01:00
dr. M.S. (Matthijs) Berends
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg
2025-02-07 18:01:22 +01:00
dr. M.S. (Matthijs) Berends
baea4323c7
(v2.1.1.9140) WISCA fix
2025-02-05 20:48:35 +01:00
dr. M.S. (Matthijs) Berends
d84033bbcb
(v2.1.1.9139) unit test
2025-02-01 11:10:42 +01:00
dr. M.S. (Matthijs) Berends
6a206bed12
(v2.1.1.9138) unit tests
2025-01-31 23:06:45 +01:00
dr. M.S. (Matthijs) Berends
ecc4e25e75
(v2.1.1.9137) examples fix
2025-01-31 16:28:06 +01:00
dr. M.S. (Matthijs) Berends
22afd918e6
(v2.1.1.9136) console colours, updated Suggests, added as.ab() improvement
2025-01-31 16:01:52 +01:00
dr. M.S. (Matthijs) Berends
700522b466
(v2.1.1.9135) documentation fix
2025-01-28 15:16:55 +01:00
dr. M.S. (Matthijs) Berends
e740aa691b
(v2.1.1.9134) add Gamma to WISCA documentation
2025-01-27 23:11:10 +01:00
dr. M.S. (Matthijs) Berends
2561494e06
(v2.1.1.9133) update math formulae
2025-01-27 22:43:35 +01:00
dr. M.S. (Matthijs) Berends
9520977a10
(v2.1.1.9133) (v2.1.1.9132) unit test, final fixes
2025-01-27 22:09:16 +01:00
dr. M.S. (Matthijs) Berends
f03933940c
(v2.1.1.9131) implement testthat
2025-01-27 21:43:10 +01:00
dr. M.S. (Matthijs) Berends
92166c16e8
fix2
2025-01-27 16:34:26 +01:00
dr. M.S. (Matthijs) Berends
1149360b27
(v2.1.1.9129) unit test fix
2025-01-27 16:17:03 +01:00
dr. M.S. (Matthijs) Berends
6efa317a81
(v2.1.1.9128) fix for bug-drug combinations
2025-01-27 11:51:40 +01:00
dr. M.S. (Matthijs) Berends
7accf6ff13
(v2.1.1.9127) unit tests
2025-01-27 10:46:43 +01:00
dr. M.S. (Matthijs) Berends
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
dr. M.S. (Matthijs) Berends
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
dr. M.S. (Matthijs) Berends
08ddbaa930
(v2.1.1.9123) add EFF code to antibiotics data set
2025-01-15 16:14:09 +01:00
dr. M.S. (Matthijs) Berends
2e31ec19c3
(v2.1.1.9122) fix documentation
2024-12-20 10:52:44 +01:00
dr. M.S. (Matthijs) Berends
15fc72fc66
(v2.1.1.9121) support tidymodels
2024-12-19 20:17:15 +01:00
dr. M.S. (Matthijs) Berends
8249cfda46
(v2.1.1.9120) unit test fix
2024-12-15 20:32:55 +01:00
dr. M.S. (Matthijs) Berends
7e7db6bb81
support for Dutch national MDR guideline
2024-12-15 20:15:52 +01:00
dr. M.S. (Matthijs) Berends
d7de1bc33d
(v2.1.1.9118) move ggplot2 plotting functions to general 'plotting' man page
2024-12-14 19:41:15 +01:00
dr. M.S. (Matthijs) Berends
bfef094bbc
(v2.1.1.9117) fix unit tests for old R versions
2024-12-13 10:35:17 +01:00
dr. M.S. (Matthijs) Berends
175a6777f3
(v2.1.1.9116) selectors as separate functions
2024-12-13 09:44:54 +01:00
dr. M.S. (Matthijs) Berends
e231352617
website update
2024-12-09 18:42:47 +01:00
dr. M.S. (Matthijs) Berends
e0dc7a86d7
website update
2024-12-09 14:44:11 +01:00
dr. M.S. (Matthijs) Berends
61f2890993
website update
2024-12-09 10:30:02 +01:00
dr. M.S. (Matthijs) Berends
419cb5b9c4
(v2.1.1.9112) unit test
2024-12-06 18:01:54 +01:00
dr. M.S. (Matthijs) Berends
0488d00f20
(v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175
2024-12-06 15:44:20 +01:00
dr. M.S. (Matthijs) Berends
059618e710
(v2.1.1.9110) update Py pkg
2024-11-21 22:23:40 +01:00
dr. M.S. (Matthijs) Berends
7f4ea96c09
(v2.1.1.9109) another version bump
2024-11-21 22:02:34 +01:00
dr. M.S. (Matthijs) Berends
38bb36ca19
(v2.1.1.9108) version update
2024-11-21 21:58:05 +01:00
dr. M.S. (Matthijs) Berends
0fda130a0b
(v2.1.1.9107) new pkg knowledge for AMR
2024-11-21 12:02:58 +01:00
dr. M.S. (Matthijs) Berends
31a0da0d3a
(v2.1.1.9106) bump version nr for Python testing
2024-11-21 11:22:37 +01:00
dr. M.S. (Matthijs) Berends
a80bb5146e
add Python package to repo
2024-11-21 11:07:55 +01:00
dr. M.S. (Matthijs) Berends
87271d261a
add Python package to repo
2024-11-21 10:06:26 +01:00
dr. M.S. (Matthijs) Berends
f424c39474
(v2.1.1.9103) add gpt training file to commit
2024-10-18 11:00:58 +02:00
dr. M.S. (Matthijs) Berends
da6321c504
(v2.1.1.9102) fix sir
2024-10-18 10:58:57 +02:00
dr. M.S. (Matthijs) Berends
11b1dc2b02
Fix Py
2024-10-17 15:28:13 +02:00
dr. M.S. (Matthijs) Berends
b1399259e7
(v2.1.1.9100) PyPI update
2024-10-17 15:22:19 +02:00
dr. M.S. (Matthijs) Berends
cfd31f0f0c
(v2.1.1.9099) fix generating GPT training test
2024-10-17 11:55:23 +02:00
dr. M.S. (Matthijs) Berends
a9e753b1dc
(v2.1.1.9098) update Py vigettes
2024-10-17 11:52:01 +02:00
dr. M.S. (Matthijs) Berends
40edc16fdf
fix PyPI
2024-10-15 17:31:47 +02:00
dr. M.S. (Matthijs) Berends
448b6abb06
fix Python PI publish
2024-10-15 17:27:00 +02:00
dr. M.S. (Matthijs) Berends
5c4d8fcd2a
(v2.1.1.9095) Python support
2024-10-15 17:12:55 +02:00
dr. M.S. (Matthijs) Berends
94501371cd
(v2.1.1.9094) fix antibiotics
2024-10-10 16:38:20 +02:00
dr. M.S. (Matthijs) Berends
ef79d22daf
(v2.1.1.9093) New brand names
2024-10-06 22:30:52 +02:00
dr. M.S. (Matthijs) Berends
c588902f4c
(v2.1.1.9092) Fix website
2024-10-06 16:25:31 +02:00
dr. M.S. (Matthijs) Berends
325664f5aa
(v2.1.1.9090) website error
2024-10-04 16:08:41 +02:00
dr. M.S. (Matthijs) Berends
0736ac7a7e
(v2.1.1.9089) website update
2024-10-04 15:44:05 +02:00
dr. M.S. (Matthijs) Berends
9fb891eee2
(v2.1.1.9087) update unit tests
2024-10-04 15:28:44 +02:00
dr. M.S. (Matthijs) Berends
738689beea
website (no-verify)
2024-10-02 10:31:43 +02:00
dr. M.S. (Matthijs) Berends
50a9f8f0e0
(v2.1.1.9086) website update
2024-10-02 10:20:05 +02:00
dr. M.S. (Matthijs) Berends
91415462c0
(v2.1.1.9084) add vignette about Python
2024-09-30 22:04:44 +02:00
dr. M.S. (Matthijs) Berends
8907e8e4af
(v2.1.1.9083) update for first_isolate()
2024-09-30 19:13:53 +02:00
dr. M.S. (Matthijs) Berends
681fe011fe
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
dr. M.S. (Matthijs) Berends
ac1c40d8bb
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
dr. M.S. (Matthijs) Berends
a558f4c121
(v2.1.1.9080) fix rescale_mic() for an outside MIC range
2024-09-24 22:39:40 +02:00
dr. M.S. (Matthijs) Berends
1ca40e8d67
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
dr. M.S. (Matthijs) Berends
127892430d
(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA
2024-09-22 11:45:51 +02:00
dr. M.S. (Matthijs) Berends
28bf91cbf5
(v2.1.1.9077) fix logos
2024-09-19 14:40:19 +02:00
dr. M.S. (Matthijs) Berends
82239503ee
(v2.1.1.9076)
2024-09-19 14:22:09 +02:00
dr. M.S. (Matthijs) Berends
a88472a263
test new git hook
2024-09-19 14:20:03 +02:00
dr. M.S. (Matthijs) Berends
29756977cf
no-verify
2024-09-19 13:58:41 +02:00
dr. M.S. (Matthijs) Berends
4e96a56b6a
(v2.1.1.9073) unit tests
2024-09-19 13:57:36 +02:00
dr. M.S. (Matthijs) Berends
ef8ef28650
(v2.1.1.9072)
2024-09-19 11:46:17 +02:00
dr. M.S. (Matthijs) Berends
ddb23b6e73
(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi
2024-09-19 11:44:56 +02:00
dr. M.S. (Matthijs) Berends
573c0346ed
(v2.1.1.9070) fix for mo_current mo (no-verify)
2024-07-19 18:05:49 +02:00
dr. M.S. (Matthijs) Berends
83907c9c65
add files (no-verify)
2024-07-17 14:31:09 +02:00
dr. M.S. (Matthijs) Berends
7258a491b9
(v2.1.1.9068) fix for mo_url() and as.mo() for synonyms
2024-07-17 14:29:55 +02:00
dr. M.S. (Matthijs) Berends
63f6790c58
add (no-verify)
2024-07-16 16:10:38 +02:00
dr. M.S. (Matthijs) Berends
b94dac770c
(v2.1.1.9066) git hook fix?
2024-07-16 16:09:33 +02:00
dr. M.S. (Matthijs) Berends
ff03bb6471
(v2.1.1.9065) unit tests 2
2024-07-16 15:58:18 +02:00
dr. M.S. (Matthijs) Berends
7f344836ea
(v2.1.1.9064) unit tests
2024-07-16 15:55:58 +02:00
dr. M.S. (Matthijs) Berends
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
dr. M.S. (Matthijs) Berends
4f9db23684
check for windows unit test (no-check)
2024-06-23 16:18:42 +02:00
dr. M.S. (Matthijs) Berends
82585901a7
(v2.1.1.9061) animal host fix
2024-06-19 15:41:45 +02:00
dr. M.S. (Matthijs) Berends
c67d003e9e
(v2.1.1.9060) SDD results now in as.sir()
2024-06-19 15:08:23 +02:00
