 dr. M.S. (Matthijs) Berends
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fbc9191b13
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new EUCAST rules algorithm
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2019-04-05 18:47:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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29f444543d
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added Becker 2019
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2019-03-26 14:24:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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c6a12266e7
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DSMZ data
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2019-03-18 14:29:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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504a042fba
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uncertainty levels, new WHONET codes
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2019-03-12 12:19:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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e835525cf6
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unknown codes, rsi fix
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2019-03-02 22:47:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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2565b60024
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rlang dependency, new fungi
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2019-02-28 13:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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f9ded23023
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as.mo improvement
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2019-02-26 12:33:26 +01:00 |
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dr. M.S. (Matthijs) Berends
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41ad7a22c8
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mo_rank mo_url, added Tremellales
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2019-02-22 22:12:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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fb1fc3686c
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Catalogue of life
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2019-02-20 00:04:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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54f8258f8c
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Catalogue of Life, replaces ITIS
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2019-02-18 02:33:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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efb2af9e3a
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benchmarks plots
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2019-02-14 10:23:51 +01:00 |
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dr. M.S. (Matthijs) Berends
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ed30312048
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mo codes for WHONET
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2019-02-08 16:06:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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587e00b7be
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is.rsi.eligible update
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2019-02-04 12:24:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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3efb54d016
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freq update
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2019-01-29 20:20:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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6aae206320
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WHONET/EARS-Net support
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2019-01-29 00:06:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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f4ff98b470
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WHO update, antibiotics update
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2019-01-25 13:18:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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46dcc7e2e8
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set_mo_source
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2019-01-21 15:53:01 +01:00 |
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dr. M.S. (Matthijs) Berends
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31e977937d
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fix for as.mo and freq
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2018-11-30 12:05:59 +01:00 |
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dr. M.S. (Matthijs) Berends
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9ddf6dc530
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support A. species for as.mo, cleanup
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2018-11-24 20:25:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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6b0f4ffbd4
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new kingdom
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2018-11-09 13:11:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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9cd4ab928a
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speed improvement as.mo, freq title
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2018-10-31 12:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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86b03577a7
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fix for as.mo, added also_single_tested
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2018-10-19 13:53:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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693f64bdbf
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new EUCAST rules: clinical breakpoints
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2018-10-17 17:32:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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5b5b95a47b
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count_all and some fixes
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2018-10-12 16:35:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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95c9fdc552
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CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
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2018-10-09 13:53:33 +02:00 |
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dr. M.S. (Matthijs) Berends
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ed17db0263
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renamed year columns to ref
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2018-10-01 14:44:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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3119a221e5
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authors from ITIS, diff for freq
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2018-10-01 11:39:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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92c9cc2608
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diff for freq, fix for mo_shortname
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2018-09-29 21:54:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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a6aa9e95fb
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completed old taxonomic names
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2018-09-28 20:13:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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2b0080995e
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speed improvement for as.mo, more old taxonomic names
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2018-09-27 23:23:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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450992baea
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new: 1680 old taxonomic names
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2018-09-25 16:44:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c566585b0
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first inclusion of ITIS data
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2018-09-24 23:33:29 +02:00 |
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dr. M.S. (Matthijs) Berends
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5d80cef338
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added taxonomic data from ITIS
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2018-09-17 20:53:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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b792a2754e
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added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
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2018-09-16 16:43:29 +02:00 |
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dr. M.S. (Matthijs) Berends
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b0ca49d68d
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small improvement for is.rsi.eligible, more unit tests
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2018-09-14 11:54:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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b83e6a9380
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algoritm improvement, removed all Catabacter except for C. hongkongensis
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2018-09-10 11:40:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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26f5be0033
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support for portuguese, language determination based on system
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2018-09-08 16:06:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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c5073f2fd1
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small fix for microorganisms data set
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2018-09-06 16:50:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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790bd1622d
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added vanA to vanE positive Enterococci
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2018-09-05 09:49:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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b388e3fee7
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Support for German and Spanish microorganism properties, cleanup
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2018-09-04 11:33:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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75fe4d401f
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new MOs, cleanup
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2018-09-01 21:19:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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5965d3c794
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replaced bactid by mo
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2018-08-31 13:36:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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029157b3be
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163 new trade names, added ab_tradenames
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2018-08-29 12:27:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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972fc4f6c7
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ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
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2018-08-28 13:51:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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2acdb1981c
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atc and bactid functions, readme update
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2018-08-25 22:01:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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227121af3d
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add Dialister to microorganisms
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2018-08-03 11:46:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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6262315527
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Becker classification
Lancefield classification
Added Lancefield groups to `microorganisms` data set
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2018-08-02 13:15:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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d9e204031d
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update to septic_patients, speed improvements
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2018-07-25 14:17:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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8421638b60
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new class bactid
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2018-07-23 14:14:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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c768ba0d9c
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A. lwoffi to A. lwoffii
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2018-07-04 17:34:23 +02:00 |