dr. M.S. (Matthijs) Berends
f63414d519
new g.test, extra unit tests
2018-07-10 12:27:07 +02:00
dr. M.S. (Matthijs) Berends
fc30d3fb13
freq: support for table
2018-07-09 14:02:58 +02:00
dr. M.S. (Matthijs) Berends
14b990d769
kurtosis, skewness, start with ML
2018-07-08 22:14:55 +02:00
dr. M.S. (Matthijs) Berends
34ee0247ac
addins and small improvements to microorganisms dataset
2018-07-04 17:20:03 +02:00
dr. M.S. (Matthijs) Berends
10fce8382c
include IQR and MAD in freq
2018-07-03 11:30:40 +02:00
dr. M.S. (Matthijs) Berends
3d0d21f322
rename vector2ratio to ratio
2018-07-02 11:14:20 +02:00
dr. M.S. (Matthijs) Berends
2ca01e2d8d
remove rlang dependency
2018-07-01 22:23:34 +02:00
dr. M.S. (Matthijs) Berends
3527894b49
new g.test() and edited freq()
2018-07-01 21:40:37 +02:00
dr. M.S. (Matthijs) Berends
f7af8a81da
update man page
2018-06-29 09:06:47 +02:00
dr. M.S. (Matthijs) Berends
6ee713cec1
move tbl_parse_guess
2018-06-29 08:56:03 +02:00
dr. M.S. (Matthijs) Berends
649a8025aa
add clipboard functions again
2018-06-27 15:54:56 +02:00
dr. M.S. (Matthijs) Berends
a9bd5472d0
top_freq
2018-06-20 14:47:37 +02:00
dr. M.S. (Matthijs) Berends
4a027f3c34
extra unit tests, add row.names to freq
2018-06-19 15:20:14 +02:00
dr. M.S. (Matthijs) Berends
bdc860e29c
atc_groups
2018-06-19 10:05:38 +02:00
dr. M.S. (Matthijs) Berends
0a5898b17d
fix for printing tibbles, improve guess_bactid
2018-06-08 12:06:54 +02:00
dr. M.S. (Matthijs) Berends
efdf5a3dc5
prevent dplyr:row_number warning
2018-05-31 14:19:25 +02:00
7a6d5fb6b7
rsi/mic fix
2018-05-31 09:02:49 +02:00
dr. M.S. (Matthijs) Berends
5593aee19e
edit as.rsi algor.
2018-05-30 23:02:16 +02:00
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
0d80647d41
fix SI and IR
2018-05-16 11:19:45 +02:00
dr. M.S. (Matthijs) Berends
f05e7178cb
added vignette of freq
2018-05-09 11:44:46 +02:00
dr. M.S. (Matthijs) Berends
25b3346d9a
edit methodology of rsi
2018-05-03 10:19:02 +02:00
dr. M.S. (Matthijs) Berends
c0fc82c794
Added function `n_rsi`
2018-05-02 14:56:25 +02:00
dr. M.S. (Matthijs) Berends
6eaf594cb7
update data info
2018-05-01 09:57:50 +02:00
dr. M.S. (Matthijs) Berends
19ccc51f40
remove clipboard functions
2018-05-01 09:36:45 +02:00
dr. M.S. (Matthijs) Berends
6fa93fc286
fix clipboard check
2018-04-30 16:54:37 +02:00
dr. M.S. (Matthijs) Berends
8fe70d5652
Fix Latex PDF error
2018-04-30 16:24:11 +02:00
dr. M.S. (Matthijs) Berends
970e3ed7f1
EUCAST rules for MDRO
2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends
0b22ddef8e
more unit tests
2018-04-20 13:45:34 +02:00
dr. M.S. (Matthijs) Berends
82fec5cc51
Try to support older R versions
2018-04-19 14:10:57 +02:00
dr. M.S. (Matthijs) Berends
e7396b8f39
Try to support older R versions
2018-04-19 12:50:23 +02:00
dr. M.S. (Matthijs) Berends
d79132b29f
Try to support older R versions
2018-04-18 15:41:27 +02:00
dr. M.S. (Matthijs) Berends
4b5530ed64
Try to support older R versions
2018-04-18 15:19:00 +02:00
dr. M.S. (Matthijs) Berends
a814d82b4b
try to support older R versions
2018-04-18 14:50:16 +02:00
dr. M.S. (Matthijs) Berends
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
dr. M.S. (Matthijs) Berends
3165c50d06
more MOs
2018-04-03 16:07:32 +02:00
dr. M.S. (Matthijs) Berends
07bdd61241
update dependencies
2018-04-02 16:05:09 +02:00
dr. M.S. (Matthijs) Berends
c182a9673d
fix clipboard on linux
2018-04-02 11:11:21 +02:00
b7f29aa748
Update first_isolates.R
2018-03-29 15:15:31 +02:00
f1dbed6fcc
Update clipboard.R
2018-03-29 14:56:40 +02:00
136272cb71
Update clipboard.R
2018-03-29 14:16:42 +02:00
fd04df5f9d
Update clipboard.R
2018-03-29 13:23:02 +02:00
2f4823f7a7
Update clipboard.R
2018-03-29 13:10:55 +02:00
dr. M.S. (Matthijs) Berends
6f7730dcaa
add tests using testthat
2018-03-27 17:43:42 +02:00
9637b43357
Remove Windows only function
2018-03-23 14:59:02 +01:00
1b3daebc84
Remove Windows only function
2018-03-23 14:52:56 +01:00
dr. M.S. (Matthijs) Berends
53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends
fe803f7279
use guess_bactid for GLIMS codes
2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends
c765f424ab
typo
2018-03-19 21:03:23 +01:00
dr. M.S. (Matthijs) Berends
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be `points` or `keyantibiotics, see `?first_isolate`
...
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
MS Berends
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