P281424
/
AMR
mirror of https://github.com/msberends/AMR.git
1
0
Fork 0
Code Releases Activity
1,423 Commits 2 Branches 28 Tags 1.6 GiB
Commit Graph

120 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
dr. M.S. (Matthijs) Berends d9a4b0bcaf (v1.1.0.9021) 1st isolates update 2020-05-28 10:51:56 +02:00
dr. M.S. (Matthijs) Berends 86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
dr. M.S. (Matthijs) Berends 5bdece1f9d (v1.1.0.9000) CI fix 2020-04-30 09:05:03 +02:00
dr. M.S. (Matthijs) Berends b040185269 (v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI 2020-04-29 14:33:44 +02:00
dr. M.S. (Matthijs) Berends 4be54d608c (v1.0.1.9008) RIVM abbreviations for drugs 2020-04-14 20:38:09 +02:00
dr. M.S. (Matthijs) Berends d1cb7d3b6f (v1.0.1.9005) as.mo() improvements 2020-04-13 21:09:56 +02:00
dr. M.S. (Matthijs) Berends 219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
dr. M.S. (Matthijs) Berends 5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
dr. M.S. (Matthijs) Berends c7a76ba713 (v0.9.0.9020) as.mo() improvement 2020-02-09 22:04:29 +01:00
dr. M.S. (Matthijs) Berends 4e1c16c5a5 (v0.9.0.9019) website update 2020-02-01 15:09:36 +01:00
dr. M.S. (Matthijs) Berends a13c62e6e8 (v0.9.0.9016) Support SNOMED codes 2020-01-27 19:14:23 +01:00
dr. M.S. (Matthijs) Berends 9feef53bde (v0.8.0.9037) complete documentation rewrite 2019-11-28 23:00:37 +01:00
dr. M.S. (Matthijs) Berends c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
dr. M.S. (Matthijs) Berends 09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
dr. M.S. (Matthijs) Berends 66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
dr. M.S. (Matthijs) Berends 3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
dr. M.S. (Matthijs) Berends e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
dr. M.S. (Matthijs) Berends 7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
dr. M.S. (Matthijs) Berends 6598c5615d (v0.7.1.9033) 5000 new fungi 2019-08-09 23:22:10 +02:00
dr. M.S. (Matthijs) Berends 3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends 254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
dr. M.S. (Matthijs) Berends 702da574c0 website update 2019-06-02 19:50:22 +02:00
dr. M.S. (Matthijs) Berends bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
dr. M.S. (Matthijs) Berends 493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
dr. M.S. (Matthijs) Berends cc403169c6 first isolate missing dates fix 2019-05-13 14:56:23 +02:00
dr. M.S. (Matthijs) Berends 30b559827c documentation update 2019-04-07 22:40:02 +02:00
dr. M.S. (Matthijs) Berends c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
dr. M.S. (Matthijs) Berends e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
dr. M.S. (Matthijs) Berends 2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
dr. M.S. (Matthijs) Berends 54162522bd age_groups fix 2019-02-27 11:36:12 +01:00
dr. M.S. (Matthijs) Berends 41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
dr. M.S. (Matthijs) Berends 68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
dr. M.S. (Matthijs) Berends 13120f465f website update 2019-02-20 13:57:23 +01:00
dr. M.S. (Matthijs) Berends 8dc027309e website update 2019-02-20 10:38:24 +01:00
dr. M.S. (Matthijs) Berends fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
dr. M.S. (Matthijs) Berends 54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
dr. M.S. (Matthijs) Berends ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
dr. M.S. (Matthijs) Berends 3efb54d016 freq update 2019-01-29 20:20:09 +01:00
dr. M.S. (Matthijs) Berends a2d3ea280a text updates 2019-01-27 13:55:23 +01:00
dr. M.S. (Matthijs) Berends f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
dr. M.S. (Matthijs) Berends 46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
dr. M.S. (Matthijs) Berends 5aad26035c edited g.test 2019-01-12 11:06:58 +01:00
dr. M.S. (Matthijs) Berends 6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
dr. M.S. (Matthijs) Berends 01a6d56334 add kingdom to mo_taxonomy 2018-12-10 21:47:25 +01:00
dr. M.S. (Matthijs) Berends 6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends 5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends 9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends 95c9fdc552 CRAN fixes for release 0.4.0 
https://cran.r-project.org/web/checks/check_results_AMR.html
 2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends ed17db0263 renamed year columns to ref 2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends 3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends 2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends 450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends 9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends 5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends 26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends 790bd1622d added vanA to vanE positive Enterococci 2018-09-05 09:49:19 +02:00
dr. M.S. (Matthijs) Berends b388e3fee7 Support for German and Spanish microorganism properties, cleanup 2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends 75fe4d401f new MOs, cleanup 2018-09-01 21:19:46 +02:00
dr. M.S. (Matthijs) Berends 5965d3c794 replaced bactid by mo 2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends 972fc4f6c7 ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid 2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends ae2433a020 rsi family for resistance analysis 2018-08-03 14:49:29 +02:00
dr. M.S. (Matthijs) Berends 6262315527 Becker classification 
Lancefield classification
Added Lancefield groups to `microorganisms` data set
 2018-08-02 13:15:45 +02:00
dr. M.S. (Matthijs) Berends d9e204031d update to septic_patients, speed improvements 2018-07-25 14:17:04 +02:00
uscloud dcc26dd942 Update freq function 2018-05-22 16:34:22 +02:00
dr. M.S. (Matthijs) Berends 6eaf594cb7 update data info 2018-05-01 09:57:50 +02:00
dr. M.S. (Matthijs) Berends 53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive 
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
 2018-03-23 14:46:02 +01:00