1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 08:46:11 +01:00
Commit Graph

146 Commits

Author SHA1 Message Date
ad662d7bab new col names for key_antibiotics 2018-07-19 15:11:23 +02:00
5cb9c541f8 new algorithm key abs 2018-07-17 13:02:05 +02:00
a5a4354651 speed improvements 2018-07-17 10:32:26 +02:00
715a7630ca support format.freq 2018-07-16 16:41:48 +02:00
6eaf33baf3 speed improvements 2018-07-15 22:56:41 +02:00
8240959f38 support older mac release 2018-07-13 19:40:50 +02:00
b6655f6454 Welcome C++! 2018-07-13 17:23:46 +02:00
a28289562a remove print function, out of scope 2018-07-11 20:12:19 +02:00
e3e10c2e88 fix for macOS and older tidyr versions 2018-07-11 12:34:02 +02:00
eca406b18b travis build fails for macos 2018-07-11 11:46:06 +02:00
f63414d519 new g.test, extra unit tests 2018-07-10 12:27:07 +02:00
fc30d3fb13 freq: support for table 2018-07-09 14:02:58 +02:00
14b990d769 kurtosis, skewness, start with ML 2018-07-08 22:14:55 +02:00
34ee0247ac addins and small improvements to microorganisms dataset 2018-07-04 17:20:03 +02:00
2ca01e2d8d remove rlang dependency 2018-07-01 22:23:34 +02:00
965fe8681b rlang dep for Travis/macOS 2018-07-01 21:50:34 +02:00
3527894b49 new g.test() and edited freq() 2018-07-01 21:40:37 +02:00
6ee713cec1 move tbl_parse_guess 2018-06-29 08:56:03 +02:00
649a8025aa add clipboard functions again 2018-06-27 15:54:56 +02:00
a9bd5472d0 top_freq 2018-06-20 14:47:37 +02:00
bdc860e29c atc_groups 2018-06-19 10:05:38 +02:00
0a5898b17d fix for printing tibbles, improve guess_bactid 2018-06-08 12:06:54 +02:00
efdf5a3dc5 prevent dplyr:row_number warning 2018-05-31 14:19:25 +02:00
5593aee19e edit as.rsi algor. 2018-05-30 23:02:16 +02:00
uscloud
dcc26dd942 Update freq function 2018-05-22 16:34:22 +02:00
f05e7178cb added vignette of freq 2018-05-09 11:44:46 +02:00
c0fc82c794 Added function n_rsi 2018-05-02 14:56:25 +02:00
8fe70d5652 Fix Latex PDF error 2018-04-30 16:24:11 +02:00
970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
82fec5cc51 Try to support older R versions 2018-04-19 14:10:57 +02:00
e7396b8f39 Try to support older R versions 2018-04-19 12:50:23 +02:00
a814d82b4b try to support older R versions 2018-04-18 14:50:16 +02:00
2509e2413d MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00
972e923484 testthat for macOS 2018-04-02 16:21:03 +02:00
07bdd61241 update dependencies 2018-04-02 16:05:09 +02:00
c182a9673d fix clipboard on linux 2018-04-02 11:11:21 +02:00
1b3cc41c08
fix tests 2018-03-27 17:58:46 +02:00
6f7730dcaa
add tests using testthat 2018-03-27 17:43:42 +02:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
502a44eb25
- Added new function guess_bactid to determine the ID of a microorganism based on genus/species
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
0fec64a240 Add ORCID identifier 2018-03-19 10:28:35 +01:00
04fc3573ec
add barplots 2018-03-13 14:34:10 +01:00
be51a95448
rename columns 2018-02-26 10:53:54 +01:00
3f859210d5
new date for push test 2018-02-22 22:04:22 +01:00
d8da8daf9a
First CRAN submission edits 2018-02-22 20:48:48 +01:00
62304dc23f
first commit 2018-02-21 11:52:31 +01:00