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mirror of https://github.com/msberends/AMR.git synced 2025-04-22 14:53:51 +02:00

771 Commits

Author SHA1 Message Date
579025f678
(v2.1.1.9241) fix sir 2025-04-18 13:25:59 +02:00
cf91e677c6
(v2.1.1.9240) fix sir interpretation 2025-04-16 15:22:12 +02:00
d31371613e
(v2.1.1.9237) clean-up 2025-04-13 09:59:40 +02:00
40d7a971c3
(v2.1.1.9236) documentation 2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website! 2025-04-08 15:54:30 +01:00
a905303296
(v2.1.1.9234) fix CLSI 2025-04-07 17:36:01 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences 2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup 2025-03-31 10:51:31 +02:00
b972bbb96f
(v2.1.1.9230) deprecated resistance_predict(), data set folder name without space 2025-03-28 16:48:56 +01:00
49da312506
(v2.1.1.9228) repo cleaning 2025-03-28 11:17:49 +01:00
d77ad6bd6e
(v2.1.1.9227) unit test fixes 2025-03-27 15:36:27 +01:00
969a42cc8c
(v2.1.1.9226) update intrinsic_resistant, unit test fixes 2025-03-27 15:20:22 +01:00
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex 2025-03-26 17:19:17 +01:00
8deaf2c8eb
(v2.1.1.9224) skip tests on cran 2025-03-20 23:29:21 +01:00
bb110646db
(v2.1.1.9223) allow + ab 2025-03-20 22:56:32 +01:00
287e361a54
(v2.1.1.9218) Fix unit tests 2025-03-19 16:05:24 +01:00
4dc4398ad1
(v2.1.1.9217) allow + in amr selectors 2025-03-18 16:35:22 +01:00
7f1ae1f474
(v2.1.1.9203) unit tests 2025-03-15 13:25:23 +01:00
72f2e723fb
(v2.1.1.9200) new argument capped_mic_handling, add Search to website 2025-03-14 17:01:50 +01:00
e134e01418
(v2.1.1.9198) support eucast expert rules 14 and 13.1 2025-03-14 10:10:35 +01:00
861331b1df
(v2.1.1.9196) fix eucast, unit tests 2025-03-13 15:38:39 +01:00
9aab129ea6
(v2.1.1.9195) add BTL-S, fix ranks in unknown microorganisms 2025-03-13 14:30:14 +01:00
a7ef22a21e
(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET 2025-03-12 16:24:38 +01:00
e1b7252ff6
(v2.1.1.9193) new antimicrobials for screening 2025-03-12 15:09:28 +01:00
067a8aca66
(v2.1.1.9192) fix fluoroquinolones and add bleomycin 2025-03-10 17:04:35 +01:00
a2c2be23c1
(v2.1.1.9190) antibiotics deprecation in antibiogram() 2025-03-09 10:41:11 +01:00
c7af397edf
(v2.1.1.9189) Add the awesome Aislinn Cook 2025-03-07 23:25:50 +01:00
b67613ce08
(v2.1.1.9187) WISCA fix 2025-03-07 22:27:21 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
22e66741cc
(v2.1.1.9160) cleanup 2025-02-26 20:28:33 +01:00
0c3ea4b538
(v2.1.1.9159) new approach as.ab() 2025-02-26 19:23:54 +01:00
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram 2025-02-26 13:27:20 +01:00
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro 2025-02-23 11:18:08 +01:00
226d10f546
(v2.1.1.9154) documentation fix 2025-02-22 22:07:56 +01:00
abb5602532
(v2.1.1.9153) mic plot fix 2025-02-22 21:26:38 +01:00
ef02f4a7f2
(v2.1.1.9151) update readme 2025-02-15 20:53:12 +01:00
9650545d6e
(v2.1.1.9150) unit tests 2025-02-15 13:40:51 +01:00
883fbe7cfe
(v2.1.1.9149) doc fix 2025-02-15 12:46:48 +01:00
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values 2025-02-14 14:16:46 +01:00
bd2887bcd4
(v2.1.1.9146) new scale_*_sir() functions 2025-02-13 19:47:57 +01:00
Matthijs Berends
5ff9210c12
Update plot.Rd 2025-02-11 17:23:34 +01:00
07757c933c
(v2.1.1.9144) new MIC scales and fix for rescale_mic() 2025-02-11 08:48:37 +01:00
2171f05951
(v2.1.1.9143) unit tests 2025-02-07 19:18:55 +01:00
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg 2025-02-07 18:01:22 +01:00
baea4323c7
(v2.1.1.9140) WISCA fix 2025-02-05 20:48:35 +01:00
700522b466
(v2.1.1.9135) documentation fix 2025-01-28 15:16:55 +01:00
e740aa691b
(v2.1.1.9134) add Gamma to WISCA documentation 2025-01-27 23:11:10 +01:00
2561494e06
(v2.1.1.9133) update math formulae 2025-01-27 22:43:35 +01:00
1149360b27
(v2.1.1.9129) unit test fix 2025-01-27 16:17:03 +01:00