Claude
10c00ff606
Implement cli::code_highlight() for R code examples in messages (issue #191 )
...
Add highlight_code() helper that wraps cli::code_highlight() when cli >= 3.0.0
is available, falling back to plain code otherwise. Apply it to all inline
R code examples embedded in message/warning/stop strings across the package.
Also convert remaining backtick-quoted function and argument references in
messaging calls to proper cli markup: {.help AMR::fn}(), {.arg arg},
{.code expr}, and {.pkg pkg} throughout ab.R, ab_from_text.R, av_from_text.R,
amr_selectors.R, count.R, custom_antimicrobials.R, custom_microorganisms.R,
interpretive_rules.R, mo.R, mo_property.R, sir.R, sir_calc.R.
Fixes #191
https://claude.ai/code/session_01XHWLohiSTdZvCutwD7ag2b
2026-03-18 22:23:39 +00:00
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
d214f74e25
allow column name for ab in as.sir()
2024-05-20 21:29:13 +02:00
acb534102b
new species groups, updated clinical breakpoints
2023-07-08 17:30:05 +02:00
9591688811
documentation update
2023-05-27 10:39:22 +02:00
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
593d740b84
documentation, file permissions
2023-01-19 12:54:53 +01:00
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
4fe90092c7
fix for NA in as.ab()
2022-10-10 15:44:59 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
4d050aef7c
styled, unit test fix
2022-08-28 10:31:50 +02:00
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
25cef46c59
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
29dbfa2f49
(v1.6.0.9021) join functions update
2021-05-12 18:15:03 +02:00
c6289c3fc3
(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
2021-04-20 10:46:17 +02:00
850c123de7
(v1.5.0.9032) All group generics for MICs
2021-03-07 13:52:39 +01:00
8fda473e49
(v1.5.0.9015) unit test fix, grouped first isolates
2021-02-04 16:48:16 +01:00
2eca8c3f01
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
2021-02-02 23:57:35 +01:00
4eab095306
(v1.5.0.9006) major documentation update
2021-01-18 16:57:56 +01:00
d3f007bf65
(v1.4.0.9053) unit test old R versions
2020-12-29 21:23:01 +01:00
526f8afb08
(v1.4.0.9052) replaced all sapply's with type-safe vapply's
2020-12-28 22:24:33 +01:00
8b52f9b1be
(v1.4.0.9047) unit tests
2020-12-27 00:30:28 +01:00
128ebcfd62
(v1.4.0.9043) documentation update
2020-12-22 00:51:17 +01:00
81af41da3a
(v1.4.0.9041) updates based on review
2020-12-17 16:22:25 +01:00
c9fc7e8a45
(v1.4.0.9034) MIC printing update
2020-12-09 09:40:50 +01:00
4e9ccb4435
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
2020-10-19 17:09:19 +02:00
28e77680c5
(v1.4.0) matching score update
2020-10-08 11:16:03 +02:00
4e40e42011
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
2020-09-18 16:05:53 +02:00
c5f7294381
(v1.3.0) skip more CRAN tests
2020-07-31 10:50:08 +02:00
6ab468362d
(v1.2.0.9034) code cleaning
2020-07-13 09:17:24 +02:00
76fc8e1b14
(v1.2.0.9026) move to github
2020-07-08 14:48:06 +02:00
152ac5bcad
(v1.2.0.9023) ab_from_text() improvement
2020-07-02 21:12:52 +02:00
afc660dc33
(v1.2.0.9021) only progressbar in interactive sessions
2020-07-01 11:51:26 +02:00
cc6ce0a938
(v1.2.0.9020) ab_from_text() improvement
2020-07-01 11:23:05 +02:00
329a0eb0b6
(v1.2.0.9019) ab_from_text() dose and administration
2020-07-01 11:07:01 +02:00
4f6f056077
(v1.2.0.9017) ab_from_text() improvement
2020-06-26 12:31:27 +02:00
b31003c0b6
(v1.2.0.9016) fix in rsi_calc()
2020-06-26 10:21:22 +02:00
033ca49817
(v1.2.0.9015) ab_from_text()
2020-06-25 19:20:50 +02:00
344bbd57f4
(v1.2.0.9014) ab_from_text()
2020-06-25 17:34:50 +02:00
