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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 20:46:12 +01:00
Commit Graph

44 Commits

Author SHA1 Message Date
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
4ffac7e22d (v2.1.1.9051) fix VGS mo code 2024-06-16 11:28:56 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
3179216c81 (v2.1.1.9047) unit test and index 2024-06-13 07:37:53 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
19703eb5d3 (v1.1.0.9012) lose dependencies 2020-05-19 12:08:49 +02:00
d1cb7d3b6f (v1.0.1.9005) as.mo() improvements 2020-04-13 21:09:56 +02:00
c7a76ba713 (v0.9.0.9020) as.mo() improvement 2020-02-09 22:04:29 +01:00
9a3891efe4 (v0.9.0.9014) Machine reading guidelines 2020-01-27 11:05:39 +01:00
7c28b392b1 (v0.8.0.9035) add more mo codes 2019-11-24 22:48:56 +01:00
3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
8ce252fbc5 (v0.7.1.9083) LIS code improvement 2019-09-23 17:32:05 +02:00
66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
9ac5a34b36 (v0.7.1.9014) MO codes update 2019-07-16 16:14:11 +02:00
254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00