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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:06:12 +01:00
Commit Graph

25 Commits

Author SHA1 Message Date
681fe011fe (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
83907c9c65 add files (no-verify) 2024-07-17 14:31:09 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
2d97cca6d9 fix reference_df endless loop 2023-06-26 13:52:02 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs 2023-04-20 15:20:41 +02:00
1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
4416394e10 website update 2023-02-26 21:26:58 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
f0a2cdbf5e update mo algorithm 2022-12-20 16:14:04 +01:00
b1b7534c78 incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
56dad34e68 update prevalence with new phyla 2022-12-09 13:37:08 +01:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
4cb1db4554 data export 2022-08-27 20:51:26 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00