Commit Graph

22 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
dr. M.S. (Matthijs) Berends acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends f065945d7b
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
dr. M.S. (Matthijs) Berends 9591688811 documentation update 2023-05-27 10:39:22 +02:00
dr. M.S. (Matthijs) Berends 0bcf55d3b6 improve `as.mo()` 2023-05-24 15:55:53 +02:00
dr. M.S. (Matthijs) Berends 80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
dr. M.S. (Matthijs) Berends 262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
dr. M.S. (Matthijs) Berends c2cfc5ef84 fix for `antibiogram()`, transform `WHONET` data set to `sir` 2023-02-22 15:40:05 +01:00
dr. M.S. (Matthijs) Berends dad25302f2 make `rsi` work in more cases, documentation update 2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends 8d902410f9 unit tests 2023-02-18 14:56:06 +01:00
dr. M.S. (Matthijs) Berends 45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends 68abb00c59 add include_screening to `as.sir()` 2023-02-12 15:09:54 +01:00
dr. M.S. (Matthijs) Berends c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
dr. M.S. (Matthijs) Berends c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
dr. M.S. (Matthijs) Berends 2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
dr. M.S. (Matthijs) Berends bc434db835 bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends 1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends 9e99e66f01 use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends 830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
dr. M.S. (Matthijs) Berends 19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends 98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00