 dr. M.S. (Matthijs) Berends
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bb2ed55842
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(v0.9.0) v0.9.0
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2019-11-29 19:43:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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9feef53bde
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(v0.8.0.9037) complete documentation rewrite
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2019-11-28 23:00:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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c5f00f4a9f
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(v0.8.0.9036) complete documentation rewrite
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2019-11-28 22:32:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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7c28b392b1
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(v0.8.0.9035) add more mo codes
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2019-11-24 22:48:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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e53cc4990c
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(v0.8.0.9034) add cid to antivirals
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2019-11-23 12:39:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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267320f15f
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(v0.8.0.9033) antivirals data set, cleanup
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2019-11-18 12:10:47 +01:00 |
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dr. M.S. (Matthijs) Berends
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67f3f4387b
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(v0.8.0.9032) fix regex error
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2019-11-15 16:50:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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09e2730b53
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(v0.8.0.9031) as.mo() improvements
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2019-11-15 15:25:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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248b45da71
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(v0.8.0.9030) depend on tidyr >= 1.0.0
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2019-11-11 10:46:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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d22834c5b8
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(v0.8.0.9029) cleanup
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2019-11-10 15:50:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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54b6322056
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(v0.8.0.9028) examples fix
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2019-11-10 13:17:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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59ededa8dc
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(v0.8.0.9027) adding susceptibility() and resistance()
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2019-11-10 12:16:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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ef640add2d
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(v0.8.0.9021) update vignettes
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2019-11-09 11:33:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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e2d05cb1b0
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(v0.8.0.9017) keywords update
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2019-11-06 14:43:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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a1fd2cd98a
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(v0.8.0.9014) unit test update
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2019-11-05 22:23:45 +01:00 |
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dr. M.S. (Matthijs) Berends
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2560aa1a53
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(v0.8.0.9013) unit test update
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2019-11-05 21:52:58 +01:00 |
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dr. M.S. (Matthijs) Berends
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5345d2759a
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(v0.8.0.9012) mdro improvement
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2019-11-05 11:28:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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fe606e287b
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(v0.8.0.9011) col guess update
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2019-11-04 12:08:08 +01:00 |
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dr. M.S. (Matthijs) Berends
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9060233953
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(v0.8.0.9010) mdro bug fix
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2019-11-04 11:35:34 +01:00 |
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dr. M.S. (Matthijs) Berends
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0bb531f3e0
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(v0.8.0.9009) unit test
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2019-11-03 22:41:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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29e448883d
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(v0.8.0.9008) new verbose mode for MDROs
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2019-11-03 22:24:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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09c4b04cd0
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(v0.8.0.9007) Enterobacterales order
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2019-10-30 23:02:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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7ff2ad8188
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(v0.8.0.9006) small typos
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2019-10-27 00:31:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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412077a6f2
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(v0.8.0.9005) fix unit tests
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2019-10-26 22:21:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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d2e8249edd
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(v0.8.0.9004) added MDR guideline by Magiorakos et al.
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2019-10-26 21:56:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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c01dc8a5b7
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(v0.8.0.9003) printing fix for AB columns
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2019-10-23 15:44:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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3e5ab53209
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(v0.8.0.9002) eucast_rules() fix for S. maltophilia
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2019-10-23 14:48:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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666126cd5e
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(v0.8.0.9001) guideline text on as.rsi()
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2019-10-21 14:12:28 +02:00 |
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dr. M.S. (Matthijs) Berends
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10e6b225e7
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(v0.7.1.9107) v0.8.0
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2019-10-15 14:35:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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00cdb498a0
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(v0.7.1.9102) lintr
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2019-10-11 17:21:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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c8f6b97847
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(v0.7.1.9100) bug_drug speed, MIC levels
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2019-10-08 22:21:33 +02:00 |
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dr. M.S. (Matthijs) Berends
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683d226fd3
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Update guess_ab_col.R
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2019-10-08 08:02:19 +00:00 |
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dr. M.S. (Matthijs) Berends
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f479dfce60
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(v0.7.1.9097) mdro() examples fix
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2019-10-07 14:57:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e9c4c1b4e
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(v0.7.1.9096) German guideline for mdro()
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2019-10-07 14:32:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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1e260d85c8
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(v0.7.1.9095) get_column_abx() fix
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2019-10-06 22:19:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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3d5692219e
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(v0.7.1.9094) get_column_abx() improvement
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2019-10-06 21:44:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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b6653a620a
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(v0.7.1.9093) as.ab() fix
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2019-10-06 21:07:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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8bc4081b03
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(v0.7.1.9092) as.ab() improvements
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2019-10-04 15:36:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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edb599ae0b
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(v0.7.1.9091) percentage from clean pkg
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2019-09-30 16:45:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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b39e7feae6
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(v0.7.1.9090) factor levels of mdr_tb
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2019-09-26 21:58:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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b9f01d686e
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(v0.7.1.9089) eucast file update
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2019-09-25 22:37:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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99d0fe76dd
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(v0.7.1.9088) bug_drug improvement
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2019-09-25 15:43:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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04cd0d25db
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(v0.7.1.9087) small fix
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2019-09-23 23:09:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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38336d7408
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(v0.7.1.9086) small fix
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2019-09-23 23:00:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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ad5f211a8f
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(v0.7.1.9085) Salmonella fix
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2019-09-23 21:24:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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76dc948067
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(v0.7.1.9084) CI fix
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2019-09-23 20:55:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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8ce252fbc5
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(v0.7.1.9083) LIS code improvement
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2019-09-23 17:32:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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a8c6b8f9c4
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(v0.7.1.9082) CI fix
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2019-09-23 14:37:24 +02:00 |
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dr. M.S. (Matthijs) Berends
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64d9829030
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(v0.7.1.9081) bug_drug fixes
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2019-09-23 13:53:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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66d405ff57
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(v0.7.1.9080) new LIS codes
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2019-09-22 17:19:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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57b0bd92a0
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(v0.7.1.9079) small fixes
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2019-09-22 12:41:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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46b61e9a70
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(v0.7.1.9078) unit tests
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2019-09-20 14:50:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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40e6b3e8f6
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(v0.7.1.9077) mo codes fix
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2019-09-20 14:18:29 +02:00 |
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dr. M.S. (Matthijs) Berends
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3596adb295
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(v0.7.1.9076) mo codes
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2019-09-20 12:33:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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e2aa4f996b
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(v0.7.1.9075) new microorganism codes
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2019-09-18 15:46:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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f553a08a7b
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(v0.7.1.9074) CI updates
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2019-09-16 12:00:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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398c5bdc4f
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(v0.7.1.9073) as.mo() self-learning algorithm
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2019-09-15 22:57:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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cd178ee569
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(v0.7.1.9072) key_antibiotics() for foreign systems
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2019-09-12 15:08:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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b5d2a08401
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(v0.7.1.9071) p_symbol()
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2019-09-03 09:47:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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06b6266366
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(v0.7.1.9070) na.rm for age(), age_groups()
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2019-09-02 15:17:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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c7be72f0ce
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(v0.7.1.9069) documentation update
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2019-09-01 13:16:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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88ee1b7268
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(v0.7.1.9068) gramstain to freq()
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2019-08-30 14:50:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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34a82d091e
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(v0.7.1.9067) honor info
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2019-08-28 17:12:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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e2b78fa428
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(v0.7.1.9066) bug-drug fix
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2019-08-27 23:00:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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248638ad91
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(v0.7.1.9065) bug-drug fix
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2019-08-27 22:41:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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f3276592b7
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(v0.7.1.9064) bug-drug fix
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2019-08-27 19:15:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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93be16484b
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(v0.7.1.9063) septic_patients -> example_isolates
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2019-08-27 16:45:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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7a6fce4eb8
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(v0.7.1.9062) mo/ab assignment improvements
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2019-08-26 16:02:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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13d4fef801
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(v0.7.1.9061) mo_property improvement
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2019-08-26 10:03:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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05dcb43660
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(v0.7.1.9060) globals
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2019-08-25 23:25:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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e46cb0399f
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(v0.7.1.9059) bug_drug_combinations
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2019-08-25 22:53:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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7c069145ac
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(v0.7.1.9058) as.mo() improvement
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2019-08-20 11:40:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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04d49a62af
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(v0.7.1.9057) get_column_abx() improvement
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2019-08-15 17:09:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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920212e815
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(v0.7.1.9056) mo and ab subsetting
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2019-08-14 14:57:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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7108454ba5
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(v0.7.1.9055) algorithm improvements
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2019-08-13 16:15:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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5f2733349e
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(v0.7.1.9038) mo algorithm inprovements
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2019-08-12 19:07:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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c44c5e3913
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(v0.7.1.9037) CI and global env fix
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2019-08-12 15:34:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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bd252a2984
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(v0.7.1.9036) preserve ab/mo classes in subsetting
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2019-08-12 14:48:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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1d423cca89
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(v0.7.1.9035) cephalosporins and unit tests
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2019-08-11 19:07:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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3f5828e74a
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(v0.7.1.9034) mo.codes fix for Dracunculus spp.
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2019-08-09 23:45:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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6598c5615d
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(v0.7.1.9033) 5000 new fungi
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2019-08-09 23:22:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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6a349bf757
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(v0.7.1.9032) eucast_rules() improvements
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2019-08-09 14:28:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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1ce4b72dd2
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(v0.7.1.9031) include_unknown for first_isolate()
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2019-08-08 22:39:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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22a206ffd8
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(v0.7.1.9030) eucast_rules() fix
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2019-08-08 15:52:07 +02:00 |
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dr. M.S. (Matthijs) Berends
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bfa92eb166
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(v0.7.1.9028) predict update
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2019-08-07 15:58:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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90c874025a
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(v0.7.1.9027) tibble printing
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2019-08-07 15:37:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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96b334d7cc
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website update
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2019-08-06 14:46:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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3a1f960f89
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(v0.7.1.9024) eucast_rules() fix, new MOs
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2019-08-06 14:39:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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85b62aaf8f
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(v0.7.1.9023) wrong percentage in as.mo()
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2019-08-04 17:41:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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d6ab3896a1
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(v0.7.1.9021) CI fix for resistance_predict
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2019-08-04 10:48:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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2a62c3d62a
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(v0.7.1.9018) deps
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2019-07-30 13:12:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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ec0ca20dee
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(v0.7.1.9017) deps
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2019-07-29 21:20:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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b7e2d7b9b8
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(v0.7.1.9016) deps
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2019-07-29 17:34:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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240f03a672
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(v0.7.1.9015) Remove freq()
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2019-07-29 13:33:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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9ac5a34b36
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(v0.7.1.9014) MO codes update
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2019-07-16 16:14:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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c652c6913f
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(v0.7.1.9013) guess_mo_ab speed improvement
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2019-07-11 13:39:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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68230d0712
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(v0.7.1.90012) mo_shortname fix
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2019-07-10 21:36:51 +02:00 |
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dr. M.S. (Matthijs) Berends
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b452de2fe4
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(v0.7.1.9010) eucast informative text in verbose mode
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2019-07-09 13:36:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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b15d59cf03
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(v0.7.1.9009) note for WHOCC
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2019-07-09 11:22:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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c57ad26c5b
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(v0.7.1.9007) mdro update
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2019-07-04 15:26:07 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ff20af123
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(v0.7.1.9006) new rsi calculations, atc class removal
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2019-07-02 16:48:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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156d550895
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(v0.7.1.9005) new rsi calculations, atc class removal
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2019-07-01 14:03:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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65c6702b21
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(v0.7.1.9004) atc class removal
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2019-06-27 11:57:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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453c159eac
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0.7.1
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2019-06-23 14:49:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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c9156c004a
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(v0.7.0.9013) mo_synonym fix
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2019-06-22 14:49:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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7094c1f459
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website update
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2019-06-16 22:14:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c39c35f86
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(v0.7.0.9010) mo_synonyms, plot/barplot fixes
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2019-06-16 21:42:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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980be2b22d
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(v0.7.0.9009) global note
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2019-06-13 16:40:35 +02:00 |
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dr. M.S. (Matthijs) Berends
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254745061c
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(v0.7.0.9008) T. vaginalis, rsi_df
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2019-06-13 14:28:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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699e87ab4a
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(v0.7.0.9007) renamed notes fix
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2019-06-12 16:08:20 +02:00 |
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dr. M.S. (Matthijs) Berends
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44ab53128e
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(v0.7.0.9006) ab algorithm fix for ATC codes
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2019-06-11 15:31:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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8f674e19bb
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(v0.7.0.9005) ab algorithm update
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2019-06-11 14:18:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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ec48f1d83b
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(v0.7.0.9003) scale fix
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2019-06-08 23:50:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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f50d3a5ba1
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(v0.7.0.9002) scale fix
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2019-06-08 15:00:28 +02:00 |
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dr. M.S. (Matthijs) Berends
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f02679fb63
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(v0.7.0.9001) new pathovars, small fixes
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2019-06-07 22:47:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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270aa0dd33
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v0.7.0
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2019-06-03 17:45:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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bd73988f15
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(v0.6.1.9053) prerelease fixes
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2019-06-02 19:23:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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2667fff8a7
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(v0.6.1.9050) support staged install
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2019-06-01 20:40:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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a665612cb8
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(v0.6.1.9049) data creation fix
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2019-05-31 21:20:16 +02:00 |
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dr. M.S. (Matthijs) Berends
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0a6580b4eb
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(v0.6.1.9047) ggplot fix
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2019-05-31 20:48:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ed27c7e7a
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(v0.6.1.9046) ggplot fix
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2019-05-31 20:25:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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f03f71eced
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(v0.6.1.9045) age test fix
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2019-05-31 14:40:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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493ae2ba0c
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(v0.6.1.9044) first_isolate fix for species
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2019-05-31 14:25:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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1f8ee3ec3e
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(v0.6.1.9043) age doc fix
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2019-05-30 08:51:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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8b5e2b030b
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added boxplot for (grouped) freq()
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2019-05-29 19:56:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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62e6f41961
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website update
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2019-05-29 00:36:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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27380fa021
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fixes for microorganisms.codes
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2019-05-28 16:50:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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7e0e171512
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website update
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2019-05-23 19:39:07 +02:00 |
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dr. M.S. (Matthijs) Berends
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3688fcaabf
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doc fix
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2019-05-23 17:59:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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bbf8b611e3
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doc fix
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2019-05-23 17:35:58 +02:00 |
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dr. M.S. (Matthijs) Berends
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60983a1640
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added mdr_tb()
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2019-05-23 16:58:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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07d26cd485
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faster determination of abx
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2019-05-20 19:12:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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6eb08a2ea3
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new git flow to repository
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2019-05-20 14:16:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ca00e1868
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speed improvement eucast_rules(), support more old MO codes
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2019-05-20 12:00:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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b0033dae1b
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website update
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2019-05-17 20:22:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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c3ae6b7699
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freq fix
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2019-05-17 09:09:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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5eda991c47
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ab_info fix
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2019-05-16 22:07:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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4c3cf85a65
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ab_info, other bug fixes
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2019-05-16 21:20:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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f6bf54b37d
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documentation fix
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2019-05-13 20:16:51 +02:00 |
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dr. M.S. (Matthijs) Berends
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2ea0c93e44
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documentation fix
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2019-05-13 16:35:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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cc403169c6
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first isolate missing dates fix
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2019-05-13 14:56:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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0dc0715dc6
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CI tests
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2019-05-13 12:21:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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38a4421450
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CI tests
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2019-05-13 10:10:16 +02:00 |
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dr. M.S. (Matthijs) Berends
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fcc77164e9
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mdro fix
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2019-05-11 23:30:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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68cc7ef0d0
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new antibiotics
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2019-05-10 16:44:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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73f1ee1159
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freq/age fix
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2019-04-11 00:54:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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461eec9bac
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cfta streptococci, codecov.yml
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2019-04-09 14:59:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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cffb7787d8
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cfta streptococci
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2019-04-09 10:34:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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30b559827c
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documentation update
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2019-04-07 22:40:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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51fdc5d6cc
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self-learning off
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2019-04-06 09:38:23 +02:00 |