|
|
4e96a56b6a
|
(v2.1.1.9073) unit tests
|
2024-09-19 13:57:36 +02:00 |
|
|
|
ddb23b6e73
|
(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi
|
2024-09-19 11:44:56 +02:00 |
|
|
|
640888f408
|
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
|
2024-07-16 14:53:17 +02:00 |
|
|
|
2dee1d71dc
|
(v2.1.1.9053) add verbose to as.sir(), unit test fix
|
2024-06-17 10:38:45 +02:00 |
|
|
|
bdbf5198a2
|
(v2.1.1.9050) vctrs fix for sir, small documentation fixes
|
2024-06-15 15:33:49 +02:00 |
|
|
|
de17de1be9
|
(v2.1.1.9048) vctrs update for sir
|
2024-06-13 20:55:17 +02:00 |
|
|
|
2899b3c840
|
new mo_group_members()
|
2024-04-19 10:18:21 +02:00 |
|
|
|
94e9a4d99b
|
update MIC implementation
|
2024-04-07 20:22:59 +02:00 |
|
|
|
0039cb05d6
|
update MIC comparisons
|
2024-04-05 16:44:43 +02:00 |
|
|
|
35963ca3dc
|
vctrs fix
|
2024-02-24 18:51:37 +01:00 |
|
|
|
4aa5413641
|
fix unit test
|
2024-02-24 18:14:50 +01:00 |
|
|
|
7be4dabbc0
|
support veterinary MIC/disk translation
|
2024-02-24 15:16:52 +01:00 |
|
|
|
c7461766ce
|
Remove RSI from package, add extra MIC scale functions
|
2023-12-03 11:34:48 +01:00 |
|
|
|
7a4628b73f
|
Added C. freundii complex and Y. pseudotuberculosis complex
|
2023-07-14 10:49:06 +02:00 |
|
|
|
8df1cd8d97
|
interpretation fixes
|
2023-07-11 09:50:45 +02:00 |
|
|
|
a4e2e25e3f
|
reftbl in plots, speedup for as.sir() and mo_validate
|
2023-07-10 16:43:46 +02:00 |
|
|
|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
|
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
|
|
|
9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
|
|
|
c28cfa3a77
|
fix documentation
|
2023-03-16 08:55:37 +01:00 |
|
|
|
80cfc503c2
|
check for 2.0
|
2023-03-12 13:02:37 +01:00 |
|
|
|
049baf0a71
|
fix for antibiograms on R < 3.5
|
2023-02-24 09:43:10 +01:00 |
|
|
|
e70f2cd32c
|
knitr format
|
2023-02-23 16:27:40 +01:00 |
|
|
|
8d902410f9
|
unit tests
|
2023-02-18 14:56:06 +01:00 |
|
|
|
bc434db835
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
|
|
1a0dc4bf46
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
|
|
9e99e66f01
|
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
|
2023-02-06 11:57:22 +01:00 |
|
|
|
19fd0ef121
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
Dr. Matthijs Berends
|
98e62c9af2
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
|
|
b94bc6c67b
|
adding mo fixes
|
2023-01-14 19:50:25 +01:00 |
|
|
|
1db74e86cd
|
good start-up practice
|
2022-12-29 16:23:57 +01:00 |
|
|
|
f619fb683b
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
|
|
23fe427cbc
|
Fixes for Salmonella
|
2022-12-17 14:31:33 +01:00 |
|
|
|
8da2467209
|
updated taxonomy
|
2022-12-12 00:14:56 +01:00 |
|
|
|
e7d7b94b3e
|
no obligatory note on startup
|
2022-12-09 15:10:49 +01:00 |
|
|
|
31fb81c382
|
revised as.rsi(), fix for mdro()
|
2022-11-24 20:29:00 +01:00 |
|
Dr. Matthijs Berends
|
496c08d851
|
Implement extensive support for antiviral agents support (#77)
|
2022-11-13 08:46:10 +01:00 |
|
|
|
796b972f8a
|
extend vctrs support
|
2022-10-31 11:19:06 +01:00 |
|
|
|
9444ed6d1d
|
fix antibiotics error
|
2022-10-30 21:05:46 +01:00 |
|
|
|
d40e0ef20b
|
completely updated antibiotics
|
2022-10-30 14:31:45 +01:00 |
|
|
|
c2801ba7a1
|
new rsi_translation
|
2022-10-22 22:00:15 +02:00 |
|
|
|
76bcd3528c
|
move object assignment to AMR_env
|
2022-10-14 13:02:50 +02:00 |
|
|
|
33227a5d90
|
support ab selectors for manual AB codes
|
2022-10-11 10:49:55 +02:00 |
|
|
|
4fe90092c7
|
fix for NA in as.ab()
|
2022-10-10 15:44:59 +02:00 |
|
Dr. Matthijs Berends
|
cd2acc4a29
|
New mo algorithm, prepare for 2.0
|
2022-10-05 09:12:22 +02:00 |
|
|
|
63fe160322
|
new rsi_interpretation_history
|
2022-09-01 15:20:57 +02:00 |
|
|
|
3fca703fbf
|
new AMR distance function
|
2022-08-30 21:48:02 +02:00 |
|
|
|
4d050aef7c
|
styled, unit test fix
|
2022-08-28 10:31:50 +02:00 |
|
|
|
303d61b473
|
new tibble export
|
2022-08-27 20:49:37 +02:00 |
|
|
|
3864ab2fb8
|
Feather and Parquet files
|
2022-08-26 22:25:15 +02:00 |
|
