 dr. M.S. (Matthijs) Berends
|
ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3d3366faf7
|
is.rsi.eligible update
|
2019-02-04 18:04:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
587e00b7be
|
is.rsi.eligible update
|
2019-02-04 12:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0b3dc0231f
|
freq fix
|
2019-01-30 16:00:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3efb54d016
|
freq update
|
2019-01-29 20:20:09 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6aae206320
|
WHONET/EARS-Net support
|
2019-01-29 00:06:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f6336fdd89
|
quasiquotation for freq()
|
2019-01-28 11:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e76961a66b
|
less deps
|
2019-01-27 19:30:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a2d3ea280a
|
text updates
|
2019-01-27 13:55:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
18b75356a9
|
re-add atc_ddd and atc_groups
|
2019-01-27 13:33:43 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6ec940bc75
|
atc_ functions
|
2019-01-27 10:53:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b39055c018
|
deprecated fix
|
2019-01-27 00:33:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f836722269
|
atc_ functions
|
2019-01-26 23:22:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f4ff98b470
|
WHO update, antibiotics update
|
2019-01-25 13:18:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
46dcc7e2e8
|
set_mo_source
|
2019-01-21 15:53:01 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8db87a15e9
|
fixes
|
2019-01-15 16:38:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
046d195064
|
resistance predict
|
2019-01-15 12:45:24 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
cda7087722
|
website update
|
2019-01-12 19:31:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5aad26035c
|
edited g.test
|
2019-01-12 11:06:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
641d866db2
|
guess_ab_col, benchmarks
|
2019-01-11 20:37:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
193a2d2863
|
EUCAST update, as.mo bugfix for empty vlaues
|
2019-01-08 16:23:45 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
bc15f660d6
|
guess_ab()
|
2019-01-06 20:23:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2c798547bf
|
language
|
2019-01-05 21:40:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6652f7d82b
|
fix warnings
|
2019-01-04 09:49:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
80ea555663
|
guess_ab
|
2019-01-03 23:56:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6b2d464f8c
|
big website update, licence txt update
|
2019-01-02 23:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
68baf058cd
|
website update
|
2018-12-31 10:35:26 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
92a32b62a7
|
new website, freq updates
|
2018-12-29 22:24:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0b8084871d
|
dplyr 0.8.0 support, fixes #7
|
2018-12-22 22:39:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b937662a97
|
limits for scale_y_percent - Licence update
|
2018-12-16 22:45:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1ed0cc9bfd
|
age_groups fix
|
2018-12-16 11:40:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2018d5b477
|
age and age_groups
|
2018-12-15 22:40:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7e5fe75a17
|
small text fixes
|
2018-12-14 07:48:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
81af7be36e
|
note about portions
|
2018-12-14 07:23:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
01a6d56334
|
add kingdom to mo_taxonomy
|
2018-12-10 21:47:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5ab7eb07bc
|
keyab automatic
|
2018-12-10 15:14:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9478ab71be
|
freq - decimals
|
2018-12-10 10:13:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8e8a9cd190
|
AI improvements
|
2018-12-07 12:04:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
60fe98bbbd
|
better as.mo handling
|
2018-12-06 14:36:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9ddf6dc530
|
support A. species for as.mo, cleanup
|
2018-11-24 20:25:09 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a8132922af
|
unit test read.4d, unselecting freq cols
|
2018-11-19 13:00:22 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
83c7da85ab
|
unit tests
|
2018-11-16 22:28:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d22b7f00da
|
unit tests
|
2018-11-16 22:22:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4fcc2b409a
|
MDRO update
|
2018-11-16 20:50:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fab64e6728
|
read.4D improvements
|
2018-11-15 12:42:35 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6b0f4ffbd4
|
new kingdom
|
2018-11-09 13:11:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
84e08f516a
|
grouping var for freq
|
2018-11-06 16:41:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d15bb2ab3f
|
read_4D
|
2018-11-05 15:30:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d07e9b904e
|
new function get_locale
|
2018-11-05 13:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e601fd259a
|
test syntax fix
|
2018-11-01 20:50:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5476fecc73
|
eucast update
|
2018-11-01 20:23:33 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f7687557c9
|
eucast updates
|
2018-11-01 17:06:08 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9cd4ab928a
|
speed improvement as.mo, freq title
|
2018-10-31 12:10:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1bf8dc2983
|
as.mo speedup: assigned to namespace
|
2018-10-29 17:26:17 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
707aa20a37
|
fixes
|
2018-10-23 14:59:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7997de6a6d
|
mdro and 1st isolate improvements
|
2018-10-23 11:15:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c2a93b46db
|
breaks param, tidyr dep change, freq markdown
|
2018-10-22 12:32:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ec15b82fd6
|
param header for freq
|
2018-10-19 21:52:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
86b03577a7
|
fix for as.mo, added also_single_tested
|
2018-10-19 13:53:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b464dd524a
|
new verbose
|
2018-10-19 00:17:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0ef91be3ac
|
param rules for EUCAST
|
2018-10-18 12:10:10 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d5a41de711
|
parameter combine_IR
|
2018-10-16 09:59:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5b5b95a47b
|
count_all and some fixes
|
2018-10-12 16:35:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a6aa9e95fb
|
completed old taxonomic names
|
2018-09-28 20:13:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2b0080995e
|
speed improvement for as.mo, more old taxonomic names
|
2018-09-27 23:23:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
450992baea
|
new: 1680 old taxonomic names
|
2018-09-25 16:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d049ec9e69
|
ggplot2_rsi fix
|
2018-09-13 14:48:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4816419f0c
|
AI improvements for microorganisms
|
2018-09-09 12:11:44 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
de36b0be23
|
fix for empty values in mo_property
|
2018-09-05 12:21:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
790bd1622d
|
added vanA to vanE positive Enterococci
|
2018-09-05 09:49:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
98ff131680
|
support for older versions of ggplot2
|
2018-08-29 16:39:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d654444c8e
|
re added nrow
|
2018-08-29 16:35:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d9e68e0a50
|
ggplot_rsi example update, more unit tests
|
2018-08-29 16:25:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
febd0ca885
|
geom_rsi - any parameter
|
2018-08-23 21:27:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1699d7b8b3
|
better example of grouping variable in ggplot_rsi
|
2018-08-14 12:07:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
59ce1eb1b1
|
ggplot_rsi improvements
|
2018-08-13 16:42:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
dba06c3295
|
abname improvement, small fixes
|
2018-08-13 11:00:53 +02:00 |